Experiment: m.b. Paraquat dichloride 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01110 and PGA1_262p01120 are separated by 78 nucleotides PGA1_262p01120 and PGA1_262p01130 are separated by 61 nucleotides PGA1_262p01130 and PGA1_262p01140 are separated by 225 nucleotides
PGA1_262p01110: PGA1_262p01110 - hypothetical protein, at 120,403 to 120,828
_262p01110
PGA1_262p01120: PGA1_262p01120 - hypothetical protein, at 120,907 to 121,305
_262p01120
PGA1_262p01130: PGA1_262p01130 - hypothetical protein, at 121,367 to 122,032
_262p01130
PGA1_262p01140: PGA1_262p01140 - RTX toxins and related Ca2+-binding proteins, at 122,258 to 127,435
_262p01140
Position (kb)
121
122
123 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 120.400 kb on + strand at 120.521 kb on + strand, within PGA1_262p01110 at 120.539 kb on + strand, within PGA1_262p01110 at 120.559 kb on + strand, within PGA1_262p01110 at 120.567 kb on - strand, within PGA1_262p01110 at 120.567 kb on - strand, within PGA1_262p01110 at 120.618 kb on - strand, within PGA1_262p01110 at 120.650 kb on + strand, within PGA1_262p01110 at 120.658 kb on - strand, within PGA1_262p01110 at 120.660 kb on + strand, within PGA1_262p01110 at 120.667 kb on + strand, within PGA1_262p01110 at 120.764 kb on + strand, within PGA1_262p01110 at 120.889 kb on - strand at 120.913 kb on - strand at 121.021 kb on + strand, within PGA1_262p01120 at 121.029 kb on - strand, within PGA1_262p01120 at 121.093 kb on - strand, within PGA1_262p01120 at 121.266 kb on + strand at 121.351 kb on + strand at 121.446 kb on + strand, within PGA1_262p01130 at 121.584 kb on + strand, within PGA1_262p01130 at 121.592 kb on - strand, within PGA1_262p01130 at 121.765 kb on + strand, within PGA1_262p01130 at 121.773 kb on - strand, within PGA1_262p01130 at 121.990 kb on - strand at 122.052 kb on - strand at 122.096 kb on + strand at 122.101 kb on + strand at 122.125 kb on + strand at 122.133 kb on - strand at 122.198 kb on + strand at 122.287 kb on - strand at 122.288 kb on - strand at 122.292 kb on + strand at 122.292 kb on + strand at 122.292 kb on + strand at 122.292 kb on + strand at 122.292 kb on + strand at 122.294 kb on + strand at 122.300 kb on - strand at 122.300 kb on - strand at 122.300 kb on - strand at 122.300 kb on - strand at 122.300 kb on - strand at 122.300 kb on - strand at 122.300 kb on - strand at 122.300 kb on - strand at 122.300 kb on - strand at 122.300 kb on - strand at 122.300 kb on - strand at 122.300 kb on - strand at 122.300 kb on - strand at 122.305 kb on - strand at 122.310 kb on - strand at 122.310 kb on - strand at 122.328 kb on - strand at 122.343 kb on - strand at 122.350 kb on + strand at 122.367 kb on - strand at 122.368 kb on - strand at 122.370 kb on + strand at 122.374 kb on + strand at 122.453 kb on - strand at 122.530 kb on + strand at 122.538 kb on - strand at 122.587 kb on + strand at 122.595 kb on - strand at 122.736 kb on - strand at 122.759 kb on + strand at 122.771 kb on + strand at 122.877 kb on + strand, within PGA1_262p01140 at 122.882 kb on + strand, within PGA1_262p01140 at 122.959 kb on - strand, within PGA1_262p01140
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.032 mg/ml remove 120,400 + +0.4 120,521 + PGA1_262p01110 0.28 +0.4 120,539 + PGA1_262p01110 0.32 +0.0 120,559 + PGA1_262p01110 0.37 -0.3 120,567 - PGA1_262p01110 0.38 +3.0 120,567 - PGA1_262p01110 0.38 +2.3 120,618 - PGA1_262p01110 0.50 -0.7 120,650 + PGA1_262p01110 0.58 +1.7 120,658 - PGA1_262p01110 0.60 -0.4 120,660 + PGA1_262p01110 0.60 -1.7 120,667 + PGA1_262p01110 0.62 +0.0 120,764 + PGA1_262p01110 0.85 -0.3 120,889 - -1.6 120,913 - +0.0 121,021 + PGA1_262p01120 0.29 +0.7 121,029 - PGA1_262p01120 0.31 -1.6 121,093 - PGA1_262p01120 0.47 -1.0 121,266 + -0.5 121,351 + +1.0 121,446 + PGA1_262p01130 0.12 +0.7 121,584 + PGA1_262p01130 0.33 +1.2 121,592 - PGA1_262p01130 0.34 +3.0 121,765 + PGA1_262p01130 0.60 -0.7 121,773 - PGA1_262p01130 0.61 +0.3 121,990 - -0.5 122,052 - +0.9 122,096 + +0.4 122,101 + +0.2 122,125 + -0.8 122,133 - -0.7 122,198 + -0.3 122,287 - +0.3 122,288 - -1.2 122,292 + +0.4 122,292 + +0.0 122,292 + +0.0 122,292 + +0.5 122,292 + +0.0 122,294 + +0.0 122,300 - -0.6 122,300 - +2.0 122,300 - +1.8 122,300 - +2.6 122,300 - +0.3 122,300 - -1.7 122,300 - -2.8 122,300 - +0.0 122,300 - +0.0 122,300 - -0.6 122,300 - +1.0 122,300 - +0.0 122,300 - -1.2 122,305 - +0.3 122,310 - +0.0 122,310 - -2.3 122,328 - +0.2 122,343 - -1.3 122,350 + +0.3 122,367 - -1.6 122,368 - +0.4 122,370 + +0.8 122,374 + -0.4 122,453 - +0.4 122,530 + +1.1 122,538 - +0.0 122,587 + -1.1 122,595 - +0.2 122,736 - +0.0 122,759 + -1.8 122,771 + +0.6 122,877 + PGA1_262p01140 0.12 -0.3 122,882 + PGA1_262p01140 0.12 -0.6 122,959 - PGA1_262p01140 0.14 +0.8
Or see this region's nucleotide sequence