Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p01130

Experiment: m.b. Paraquat dichloride 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p01110 and PGA1_262p01120 are separated by 78 nucleotidesPGA1_262p01120 and PGA1_262p01130 are separated by 61 nucleotidesPGA1_262p01130 and PGA1_262p01140 are separated by 225 nucleotides PGA1_262p01110: PGA1_262p01110 - hypothetical protein, at 120,403 to 120,828 _262p01110 PGA1_262p01120: PGA1_262p01120 - hypothetical protein, at 120,907 to 121,305 _262p01120 PGA1_262p01130: PGA1_262p01130 - hypothetical protein, at 121,367 to 122,032 _262p01130 PGA1_262p01140: PGA1_262p01140 - RTX toxins and related Ca2+-binding proteins, at 122,258 to 127,435 _262p01140 Position (kb) 121 122 123Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 120.400 kb on + strandat 120.521 kb on + strand, within PGA1_262p01110at 120.539 kb on + strand, within PGA1_262p01110at 120.559 kb on + strand, within PGA1_262p01110at 120.567 kb on - strand, within PGA1_262p01110at 120.567 kb on - strand, within PGA1_262p01110at 120.618 kb on - strand, within PGA1_262p01110at 120.650 kb on + strand, within PGA1_262p01110at 120.658 kb on - strand, within PGA1_262p01110at 120.660 kb on + strand, within PGA1_262p01110at 120.667 kb on + strand, within PGA1_262p01110at 120.764 kb on + strand, within PGA1_262p01110at 120.889 kb on - strandat 120.913 kb on - strandat 121.021 kb on + strand, within PGA1_262p01120at 121.029 kb on - strand, within PGA1_262p01120at 121.093 kb on - strand, within PGA1_262p01120at 121.266 kb on + strandat 121.351 kb on + strandat 121.446 kb on + strand, within PGA1_262p01130at 121.584 kb on + strand, within PGA1_262p01130at 121.592 kb on - strand, within PGA1_262p01130at 121.765 kb on + strand, within PGA1_262p01130at 121.773 kb on - strand, within PGA1_262p01130at 121.990 kb on - strandat 122.052 kb on - strandat 122.096 kb on + strandat 122.101 kb on + strandat 122.125 kb on + strandat 122.133 kb on - strandat 122.198 kb on + strandat 122.287 kb on - strandat 122.288 kb on - strandat 122.292 kb on + strandat 122.292 kb on + strandat 122.292 kb on + strandat 122.292 kb on + strandat 122.292 kb on + strandat 122.294 kb on + strandat 122.300 kb on - strandat 122.300 kb on - strandat 122.300 kb on - strandat 122.300 kb on - strandat 122.300 kb on - strandat 122.300 kb on - strandat 122.300 kb on - strandat 122.300 kb on - strandat 122.300 kb on - strandat 122.300 kb on - strandat 122.300 kb on - strandat 122.300 kb on - strandat 122.300 kb on - strandat 122.305 kb on - strandat 122.310 kb on - strandat 122.310 kb on - strandat 122.328 kb on - strandat 122.343 kb on - strandat 122.350 kb on + strandat 122.367 kb on - strandat 122.368 kb on - strandat 122.370 kb on + strandat 122.374 kb on + strandat 122.453 kb on - strandat 122.530 kb on + strandat 122.538 kb on - strandat 122.587 kb on + strandat 122.595 kb on - strandat 122.736 kb on - strandat 122.759 kb on + strandat 122.771 kb on + strandat 122.877 kb on + strand, within PGA1_262p01140at 122.882 kb on + strand, within PGA1_262p01140at 122.959 kb on - strand, within PGA1_262p01140

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.032 mg/ml
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120,400 + +0.4
120,521 + PGA1_262p01110 0.28 +0.4
120,539 + PGA1_262p01110 0.32 +0.0
120,559 + PGA1_262p01110 0.37 -0.3
120,567 - PGA1_262p01110 0.38 +3.0
120,567 - PGA1_262p01110 0.38 +2.3
120,618 - PGA1_262p01110 0.50 -0.7
120,650 + PGA1_262p01110 0.58 +1.7
120,658 - PGA1_262p01110 0.60 -0.4
120,660 + PGA1_262p01110 0.60 -1.7
120,667 + PGA1_262p01110 0.62 +0.0
120,764 + PGA1_262p01110 0.85 -0.3
120,889 - -1.6
120,913 - +0.0
121,021 + PGA1_262p01120 0.29 +0.7
121,029 - PGA1_262p01120 0.31 -1.6
121,093 - PGA1_262p01120 0.47 -1.0
121,266 + -0.5
121,351 + +1.0
121,446 + PGA1_262p01130 0.12 +0.7
121,584 + PGA1_262p01130 0.33 +1.2
121,592 - PGA1_262p01130 0.34 +3.0
121,765 + PGA1_262p01130 0.60 -0.7
121,773 - PGA1_262p01130 0.61 +0.3
121,990 - -0.5
122,052 - +0.9
122,096 + +0.4
122,101 + +0.2
122,125 + -0.8
122,133 - -0.7
122,198 + -0.3
122,287 - +0.3
122,288 - -1.2
122,292 + +0.4
122,292 + +0.0
122,292 + +0.0
122,292 + +0.5
122,292 + +0.0
122,294 + +0.0
122,300 - -0.6
122,300 - +2.0
122,300 - +1.8
122,300 - +2.6
122,300 - +0.3
122,300 - -1.7
122,300 - -2.8
122,300 - +0.0
122,300 - +0.0
122,300 - -0.6
122,300 - +1.0
122,300 - +0.0
122,300 - -1.2
122,305 - +0.3
122,310 - +0.0
122,310 - -2.3
122,328 - +0.2
122,343 - -1.3
122,350 + +0.3
122,367 - -1.6
122,368 - +0.4
122,370 + +0.8
122,374 + -0.4
122,453 - +0.4
122,530 + +1.1
122,538 - +0.0
122,587 + -1.1
122,595 - +0.2
122,736 - +0.0
122,759 + -1.8
122,771 + +0.6
122,877 + PGA1_262p01140 0.12 -0.3
122,882 + PGA1_262p01140 0.12 -0.6
122,959 - PGA1_262p01140 0.14 +0.8

Or see this region's nucleotide sequence