Strain Fitness in Marinobacter adhaerens HP15 around HP15_3639

Experiment: D-Alanine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3637 and HP15_3638 are separated by 158 nucleotidesHP15_3638 and HP15_3639 are separated by 101 nucleotidesHP15_3639 and HP15_3640 are separated by 418 nucleotides HP15_3637: HP15_3637 - tetratricopeptide TPR_2 repeat protein-like protein, at 3,832,079 to 3,832,924 _3637 HP15_3638: HP15_3638 - antibiotic biosynthesis monooxygenase domain protein, at 3,833,083 to 3,833,421 _3638 HP15_3639: HP15_3639 - tetratricopeptide repeat protein-like protein, at 3,833,523 to 3,834,347 _3639 HP15_3640: HP15_3640 - conserved hypothetical protein, RES superfamily, at 3,834,766 to 3,835,290 _3640 Position (kb) 3833 3834 3835Strain fitness (log2 ratio) -1 0 1 2 3at 3832.574 kb on - strand, within HP15_3637at 3832.702 kb on + strand, within HP15_3637at 3832.702 kb on + strand, within HP15_3637at 3832.710 kb on - strand, within HP15_3637at 3832.710 kb on - strand, within HP15_3637at 3832.804 kb on + strand, within HP15_3637at 3832.810 kb on - strand, within HP15_3637at 3832.877 kb on + strandat 3832.992 kb on + strandat 3833.000 kb on - strandat 3833.007 kb on + strandat 3833.053 kb on + strandat 3833.055 kb on + strandat 3833.084 kb on - strandat 3833.169 kb on + strand, within HP15_3638at 3833.267 kb on + strand, within HP15_3638at 3833.304 kb on - strand, within HP15_3638at 3833.307 kb on - strand, within HP15_3638at 3833.312 kb on - strand, within HP15_3638at 3833.324 kb on - strand, within HP15_3638at 3833.349 kb on + strand, within HP15_3638at 3833.430 kb on + strandat 3833.510 kb on + strandat 3833.668 kb on + strand, within HP15_3639at 3833.673 kb on + strand, within HP15_3639at 3833.673 kb on + strand, within HP15_3639at 3833.875 kb on + strand, within HP15_3639at 3834.195 kb on + strand, within HP15_3639at 3834.364 kb on + strandat 3834.364 kb on + strandat 3834.364 kb on + strandat 3834.364 kb on + strandat 3834.364 kb on + strandat 3834.364 kb on + strandat 3834.364 kb on + strandat 3834.372 kb on - strandat 3834.372 kb on - strandat 3834.372 kb on - strandat 3834.372 kb on - strandat 3834.374 kb on + strandat 3834.387 kb on + strandat 3834.439 kb on - strandat 3834.452 kb on + strandat 3834.460 kb on - strandat 3834.542 kb on + strandat 3834.575 kb on - strandat 3834.581 kb on + strandat 3834.621 kb on + strandat 3834.740 kb on - strandat 3834.765 kb on - strandat 3834.775 kb on + strandat 3834.812 kb on - strandat 3834.847 kb on + strand, within HP15_3640at 3835.027 kb on - strand, within HP15_3640at 3835.174 kb on + strand, within HP15_3640at 3835.256 kb on + strandat 3835.263 kb on + strandat 3835.286 kb on - strandat 3835.291 kb on + strandat 3835.315 kb on + strandat 3835.326 kb on + strandat 3835.341 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine as (N)
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3,832,574 - HP15_3637 0.59 -0.4
3,832,702 + HP15_3637 0.74 +0.0
3,832,702 + HP15_3637 0.74 +1.7
3,832,710 - HP15_3637 0.75 -0.2
3,832,710 - HP15_3637 0.75 -0.6
3,832,804 + HP15_3637 0.86 -0.3
3,832,810 - HP15_3637 0.86 +2.0
3,832,877 + +1.8
3,832,992 + +1.8
3,833,000 - -1.4
3,833,007 + -0.2
3,833,053 + +1.9
3,833,055 + -0.9
3,833,084 - -0.1
3,833,169 + HP15_3638 0.25 +0.1
3,833,267 + HP15_3638 0.54 -0.5
3,833,304 - HP15_3638 0.65 +1.5
3,833,307 - HP15_3638 0.66 +1.7
3,833,312 - HP15_3638 0.68 +1.0
3,833,324 - HP15_3638 0.71 +1.7
3,833,349 + HP15_3638 0.78 +1.7
3,833,430 + +0.6
3,833,510 + -0.3
3,833,668 + HP15_3639 0.18 -0.7
3,833,673 + HP15_3639 0.18 -0.0
3,833,673 + HP15_3639 0.18 +3.1
3,833,875 + HP15_3639 0.43 +2.3
3,834,195 + HP15_3639 0.81 +1.6
3,834,364 + -0.1
3,834,364 + -0.3
3,834,364 + -0.7
3,834,364 + +0.1
3,834,364 + +0.6
3,834,364 + +1.3
3,834,364 + -0.6
3,834,372 - -0.4
3,834,372 - -0.6
3,834,372 - +1.0
3,834,372 - -0.3
3,834,374 + +0.1
3,834,387 + +0.8
3,834,439 - -0.2
3,834,452 + -0.2
3,834,460 - +1.7
3,834,542 + +0.3
3,834,575 - +2.0
3,834,581 + +1.1
3,834,621 + -0.7
3,834,740 - -0.6
3,834,765 - +1.5
3,834,775 + -0.3
3,834,812 - -0.6
3,834,847 + HP15_3640 0.15 -0.1
3,835,027 - HP15_3640 0.50 +1.7
3,835,174 + HP15_3640 0.78 +2.1
3,835,256 + +1.6
3,835,263 + -0.1
3,835,286 - -0.2
3,835,291 + -0.7
3,835,315 + -0.9
3,835,326 + -0.1
3,835,341 + +1.9

Or see this region's nucleotide sequence