Experiment: m.b. Paraquat dichloride 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00510 and PGA1_262p00520 are separated by 193 nucleotides PGA1_262p00520 and PGA1_262p00530 are separated by 9 nucleotides
PGA1_262p00510: PGA1_262p00510 - Predicted exonuclease of the beta-lactamase fold involved in RNA processing, at 58,625 to 59,638
_262p00510
PGA1_262p00520: PGA1_262p00520 - putative multi antimicrobial extrusion protein, at 59,832 to 61,166
_262p00520
PGA1_262p00530: PGA1_262p00530 - DNA topoisomerase 1B-like protein, at 61,176 to 62,153
_262p00530
Position (kb) 59
60
61
62 Strain fitness (log2 ratio) -2
-1
0
1
2 at 58.915 kb on - strand, within PGA1_262p00510 at 58.923 kb on + strand, within PGA1_262p00510 at 59.107 kb on - strand, within PGA1_262p00510 at 59.342 kb on + strand, within PGA1_262p00510 at 59.348 kb on - strand, within PGA1_262p00510 at 59.348 kb on - strand, within PGA1_262p00510 at 59.374 kb on + strand, within PGA1_262p00510 at 59.374 kb on + strand, within PGA1_262p00510 at 59.437 kb on - strand, within PGA1_262p00510 at 59.482 kb on - strand, within PGA1_262p00510 at 59.515 kb on + strand, within PGA1_262p00510 at 59.559 kb on + strand at 59.590 kb on - strand at 59.681 kb on + strand at 59.753 kb on + strand at 59.816 kb on + strand at 59.956 kb on + strand at 59.985 kb on - strand, within PGA1_262p00520 at 59.990 kb on + strand, within PGA1_262p00520 at 59.993 kb on - strand, within PGA1_262p00520 at 59.993 kb on - strand, within PGA1_262p00520 at 59.998 kb on - strand, within PGA1_262p00520 at 60.137 kb on + strand, within PGA1_262p00520 at 60.166 kb on + strand, within PGA1_262p00520 at 60.166 kb on + strand, within PGA1_262p00520 at 60.340 kb on - strand, within PGA1_262p00520 at 60.461 kb on + strand, within PGA1_262p00520 at 60.569 kb on - strand, within PGA1_262p00520 at 60.611 kb on + strand, within PGA1_262p00520 at 60.661 kb on + strand, within PGA1_262p00520 at 60.740 kb on + strand, within PGA1_262p00520 at 60.807 kb on + strand, within PGA1_262p00520 at 60.807 kb on + strand, within PGA1_262p00520 at 60.826 kb on + strand, within PGA1_262p00520 at 61.002 kb on + strand, within PGA1_262p00520 at 61.137 kb on + strand at 61.226 kb on - strand at 61.249 kb on + strand at 61.272 kb on - strand at 61.389 kb on + strand, within PGA1_262p00530 at 61.499 kb on + strand, within PGA1_262p00530 at 61.595 kb on + strand, within PGA1_262p00530 at 61.808 kb on - strand, within PGA1_262p00530 at 61.867 kb on - strand, within PGA1_262p00530 at 61.867 kb on - strand, within PGA1_262p00530 at 62.111 kb on + strand at 62.129 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.032 mg/ml remove 58,915 - PGA1_262p00510 0.29 +1.0 58,923 + PGA1_262p00510 0.29 -0.4 59,107 - PGA1_262p00510 0.48 -2.3 59,342 + PGA1_262p00510 0.71 -0.3 59,348 - PGA1_262p00510 0.71 -1.8 59,348 - PGA1_262p00510 0.71 -2.3 59,374 + PGA1_262p00510 0.74 +0.6 59,374 + PGA1_262p00510 0.74 -0.2 59,437 - PGA1_262p00510 0.80 +0.6 59,482 - PGA1_262p00510 0.85 +0.4 59,515 + PGA1_262p00510 0.88 -0.8 59,559 + +1.6 59,590 - +0.0 59,681 + -0.7 59,753 + +0.0 59,816 + +0.3 59,956 + -0.9 59,985 - PGA1_262p00520 0.11 +0.9 59,990 + PGA1_262p00520 0.12 -0.6 59,993 - PGA1_262p00520 0.12 -0.3 59,993 - PGA1_262p00520 0.12 +0.0 59,998 - PGA1_262p00520 0.12 -0.2 60,137 + PGA1_262p00520 0.23 +0.9 60,166 + PGA1_262p00520 0.25 +0.2 60,166 + PGA1_262p00520 0.25 +0.8 60,340 - PGA1_262p00520 0.38 +0.2 60,461 + PGA1_262p00520 0.47 -1.2 60,569 - PGA1_262p00520 0.55 +0.2 60,611 + PGA1_262p00520 0.58 +1.0 60,661 + PGA1_262p00520 0.62 -0.1 60,740 + PGA1_262p00520 0.68 +0.4 60,807 + PGA1_262p00520 0.73 +1.2 60,807 + PGA1_262p00520 0.73 +0.0 60,826 + PGA1_262p00520 0.74 +2.3 61,002 + PGA1_262p00520 0.88 +0.6 61,137 + +0.9 61,226 - +0.0 61,249 + -0.8 61,272 - -1.3 61,389 + PGA1_262p00530 0.22 -1.0 61,499 + PGA1_262p00530 0.33 -0.5 61,595 + PGA1_262p00530 0.43 -2.0 61,808 - PGA1_262p00530 0.65 -2.1 61,867 - PGA1_262p00530 0.71 -1.1 61,867 - PGA1_262p00530 0.71 +1.0 62,111 + +0.0 62,129 - +0.5
Or see this region's nucleotide sequence