Experiment: m.b. Paraquat dichloride 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c33990 and PGA1_c34000 are separated by 11 nucleotides PGA1_c34000 and PGA1_c34010 are separated by 224 nucleotides PGA1_c34010 and PGA1_c34020 are separated by 421 nucleotides PGA1_c34020 and PGA1_c34030 are separated by 18 nucleotides
PGA1_c33990: PGA1_c33990 - cytochrome b, at 3,562,829 to 3,564,163
_c33990
PGA1_c34000: PGA1_c34000 - ubiquinol-cytochrome c reductase iron-sulfur subunit, at 3,564,175 to 3,564,735
_c34000
PGA1_c34010: PGA1_c34010 - glutathione S-transferase-like protein, at 3,564,960 to 3,565,562
_c34010
PGA1_c34020: PGA1_c34020 - 6,7-dimethyl-8-ribityllumazine synthase RibH, at 3,565,984 to 3,566,421
_c34020
PGA1_c34030: PGA1_c34030 - thiamine import ATP-binding protein ThiQ, at 3,566,440 to 3,567,132
_c34030
Position (kb)
3564
3565
3566 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3564.847 kb on + strand at 3564.913 kb on - strand at 3564.971 kb on - strand at 3565.085 kb on + strand, within PGA1_c34010 at 3565.100 kb on - strand, within PGA1_c34010 at 3565.162 kb on - strand, within PGA1_c34010 at 3565.167 kb on + strand, within PGA1_c34010 at 3565.167 kb on - strand, within PGA1_c34010 at 3565.182 kb on + strand, within PGA1_c34010 at 3565.189 kb on + strand, within PGA1_c34010 at 3565.245 kb on + strand, within PGA1_c34010 at 3565.262 kb on + strand, within PGA1_c34010 at 3565.262 kb on + strand, within PGA1_c34010 at 3565.263 kb on + strand, within PGA1_c34010 at 3565.270 kb on - strand, within PGA1_c34010 at 3565.302 kb on - strand, within PGA1_c34010 at 3565.381 kb on + strand, within PGA1_c34010 at 3565.389 kb on - strand, within PGA1_c34010 at 3565.428 kb on + strand, within PGA1_c34010 at 3565.514 kb on + strand at 3565.521 kb on - strand at 3565.529 kb on + strand at 3565.605 kb on + strand at 3565.621 kb on - strand at 3565.642 kb on - strand at 3565.670 kb on + strand at 3565.670 kb on + strand at 3565.678 kb on - strand at 3565.678 kb on - strand at 3565.702 kb on + strand at 3565.702 kb on + strand at 3565.704 kb on + strand at 3565.710 kb on - strand at 3565.734 kb on + strand at 3565.781 kb on + strand at 3565.851 kb on + strand at 3565.859 kb on - strand at 3565.871 kb on - strand at 3565.877 kb on + strand at 3565.907 kb on - strand at 3565.908 kb on - strand at 3565.966 kb on + strand at 3565.982 kb on + strand at 3565.992 kb on + strand at 3566.010 kb on - strand at 3566.015 kb on - strand at 3566.015 kb on - strand at 3566.062 kb on + strand, within PGA1_c34020 at 3566.062 kb on - strand, within PGA1_c34020 at 3566.077 kb on + strand, within PGA1_c34020 at 3566.147 kb on - strand, within PGA1_c34020 at 3566.147 kb on - strand, within PGA1_c34020 at 3566.174 kb on - strand, within PGA1_c34020 at 3566.176 kb on + strand, within PGA1_c34020 at 3566.176 kb on + strand, within PGA1_c34020 at 3566.227 kb on + strand, within PGA1_c34020 at 3566.231 kb on - strand, within PGA1_c34020 at 3566.231 kb on - strand, within PGA1_c34020 at 3566.237 kb on + strand, within PGA1_c34020 at 3566.237 kb on + strand, within PGA1_c34020 at 3566.244 kb on - strand, within PGA1_c34020 at 3566.249 kb on - strand, within PGA1_c34020 at 3566.299 kb on - strand, within PGA1_c34020 at 3566.380 kb on - strand at 3566.445 kb on - strand at 3566.446 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.032 mg/ml remove 3,564,847 + +0.1 3,564,913 - +0.2 3,564,971 - -0.7 3,565,085 + PGA1_c34010 0.21 -0.1 3,565,100 - PGA1_c34010 0.23 +0.5 3,565,162 - PGA1_c34010 0.33 -0.5 3,565,167 + PGA1_c34010 0.34 +0.2 3,565,167 - PGA1_c34010 0.34 -0.3 3,565,182 + PGA1_c34010 0.37 +0.2 3,565,189 + PGA1_c34010 0.38 -1.8 3,565,245 + PGA1_c34010 0.47 -0.4 3,565,262 + PGA1_c34010 0.50 +0.7 3,565,262 + PGA1_c34010 0.50 -0.8 3,565,263 + PGA1_c34010 0.50 +0.3 3,565,270 - PGA1_c34010 0.51 -0.3 3,565,302 - PGA1_c34010 0.57 -1.2 3,565,381 + PGA1_c34010 0.70 +1.5 3,565,389 - PGA1_c34010 0.71 +1.2 3,565,428 + PGA1_c34010 0.78 +2.3 3,565,514 + -0.2 3,565,521 - -0.8 3,565,529 + +1.5 3,565,605 + -0.1 3,565,621 - -0.1 3,565,642 - -0.2 3,565,670 + +0.8 3,565,670 + +0.5 3,565,678 - +0.9 3,565,678 - -0.5 3,565,702 + -1.5 3,565,702 + -0.0 3,565,704 + -0.6 3,565,710 - -0.2 3,565,734 + -0.8 3,565,781 + -0.4 3,565,851 + +0.7 3,565,859 - +0.5 3,565,871 - +0.4 3,565,877 + -0.4 3,565,907 - -0.3 3,565,908 - +1.1 3,565,966 + -0.1 3,565,982 + +0.8 3,565,992 + -0.6 3,566,010 - -0.6 3,566,015 - +1.3 3,566,015 - -0.8 3,566,062 + PGA1_c34020 0.18 +0.3 3,566,062 - PGA1_c34020 0.18 +1.3 3,566,077 + PGA1_c34020 0.21 -0.8 3,566,147 - PGA1_c34020 0.37 +0.5 3,566,147 - PGA1_c34020 0.37 +1.3 3,566,174 - PGA1_c34020 0.43 +0.3 3,566,176 + PGA1_c34020 0.44 -2.1 3,566,176 + PGA1_c34020 0.44 -0.1 3,566,227 + PGA1_c34020 0.55 -1.1 3,566,231 - PGA1_c34020 0.56 -0.4 3,566,231 - PGA1_c34020 0.56 -0.5 3,566,237 + PGA1_c34020 0.58 -0.1 3,566,237 + PGA1_c34020 0.58 +1.3 3,566,244 - PGA1_c34020 0.59 -1.5 3,566,249 - PGA1_c34020 0.61 +0.2 3,566,299 - PGA1_c34020 0.72 +0.3 3,566,380 - -0.9 3,566,445 - -0.5 3,566,446 - -0.8
Or see this region's nucleotide sequence