Strain Fitness in Marinobacter adhaerens HP15 around HP15_2658

Experiment: D-Alanine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2656 and HP15_2657 are separated by 90 nucleotidesHP15_2657 and HP15_2658 are separated by 5 nucleotidesHP15_2658 and HP15_2659 are separated by 161 nucleotides HP15_2656: HP15_2656 - glucose-methanol-choline oxidoreductase, at 2,805,524 to 2,807,194 _2656 HP15_2657: HP15_2657 - threonine efflux protein, at 2,807,285 to 2,807,905 _2657 HP15_2658: HP15_2658 - nucleoside-diphosphate-sugar epimerase, at 2,807,911 to 2,808,582 _2658 HP15_2659: HP15_2659 - Citrate uptake transporter, large transmembrane component TctA (from data), at 2,808,744 to 2,810,270 _2659 Position (kb) 2807 2808 2809Strain fitness (log2 ratio) -1 0 1 2at 2807.041 kb on + strandat 2807.144 kb on + strandat 2807.144 kb on + strandat 2807.280 kb on - strandat 2808.016 kb on - strand, within HP15_2658at 2808.102 kb on + strand, within HP15_2658at 2808.108 kb on - strand, within HP15_2658at 2808.139 kb on - strand, within HP15_2658at 2808.144 kb on - strand, within HP15_2658at 2808.170 kb on - strand, within HP15_2658at 2808.319 kb on - strand, within HP15_2658at 2808.425 kb on - strand, within HP15_2658at 2808.537 kb on - strandat 2808.607 kb on + strandat 2808.655 kb on + strandat 2808.663 kb on - strandat 2808.868 kb on + strandat 2809.036 kb on - strand, within HP15_2659at 2809.078 kb on - strand, within HP15_2659at 2809.108 kb on + strand, within HP15_2659at 2809.357 kb on + strand, within HP15_2659

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine as (N)
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2,807,041 + +1.9
2,807,144 + +1.3
2,807,144 + +1.1
2,807,280 - +1.6
2,808,016 - HP15_2658 0.16 +2.1
2,808,102 + HP15_2658 0.28 -0.4
2,808,108 - HP15_2658 0.29 +0.7
2,808,139 - HP15_2658 0.34 +1.9
2,808,144 - HP15_2658 0.35 -0.4
2,808,170 - HP15_2658 0.39 +0.2
2,808,319 - HP15_2658 0.61 +1.6
2,808,425 - HP15_2658 0.76 +1.2
2,808,537 - +1.7
2,808,607 + -1.5
2,808,655 + +0.8
2,808,663 - +1.0
2,808,868 + +2.1
2,809,036 - HP15_2659 0.19 +0.4
2,809,078 - HP15_2659 0.22 +0.0
2,809,108 + HP15_2659 0.24 -0.6
2,809,357 + HP15_2659 0.40 +1.5

Or see this region's nucleotide sequence