Experiment: D-Alanine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_232 and HP15_233 are separated by 33 nucleotides HP15_233 and HP15_234 are separated by 184 nucleotides
HP15_232: HP15_232 - molybdenum cofactor synthesis domain protein, at 216,046 to 217,260
_232
HP15_233: HP15_233 - molybdenum cofactor biosynthesis protein B-like protein, at 217,294 to 217,866
_233
HP15_234: HP15_234 - transcription termination factor rho, at 218,051 to 219,493
_234
Position (kb) 217
218 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 216.312 kb on - strand, within HP15_232 at 216.362 kb on - strand, within HP15_232 at 216.428 kb on + strand, within HP15_232 at 216.487 kb on - strand, within HP15_232 at 216.534 kb on - strand, within HP15_232 at 216.539 kb on - strand, within HP15_232 at 216.593 kb on + strand, within HP15_232 at 216.642 kb on + strand, within HP15_232 at 216.650 kb on - strand, within HP15_232 at 216.677 kb on - strand, within HP15_232 at 216.677 kb on - strand, within HP15_232 at 216.677 kb on - strand, within HP15_232 at 216.788 kb on - strand, within HP15_232 at 216.886 kb on - strand, within HP15_232 at 216.896 kb on - strand, within HP15_232 at 217.077 kb on + strand, within HP15_232 at 217.085 kb on - strand, within HP15_232 at 217.128 kb on - strand, within HP15_232 at 217.133 kb on - strand, within HP15_232 at 217.168 kb on - strand at 217.178 kb on - strand at 217.227 kb on - strand at 217.238 kb on + strand at 217.292 kb on - strand at 217.342 kb on + strand at 217.385 kb on + strand, within HP15_233 at 217.470 kb on - strand, within HP15_233 at 217.504 kb on + strand, within HP15_233 at 217.509 kb on - strand, within HP15_233 at 217.512 kb on - strand, within HP15_233 at 217.706 kb on - strand, within HP15_233 at 217.730 kb on + strand, within HP15_233 at 217.754 kb on + strand, within HP15_233 at 217.773 kb on + strand, within HP15_233 at 217.778 kb on + strand, within HP15_233 at 217.783 kb on + strand, within HP15_233 at 217.786 kb on - strand, within HP15_233 at 217.788 kb on + strand, within HP15_233 at 217.791 kb on - strand, within HP15_233 at 217.791 kb on - strand, within HP15_233 at 217.828 kb on + strand at 217.847 kb on + strand at 217.847 kb on + strand at 217.861 kb on + strand at 217.869 kb on - strand at 217.869 kb on - strand at 218.130 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine as (N) remove 216,312 - HP15_232 0.22 -0.6 216,362 - HP15_232 0.26 -1.0 216,428 + HP15_232 0.31 +1.5 216,487 - HP15_232 0.36 +0.7 216,534 - HP15_232 0.40 +0.7 216,539 - HP15_232 0.41 -1.0 216,593 + HP15_232 0.45 +0.8 216,642 + HP15_232 0.49 +1.1 216,650 - HP15_232 0.50 -0.4 216,677 - HP15_232 0.52 -0.3 216,677 - HP15_232 0.52 +2.3 216,677 - HP15_232 0.52 -0.4 216,788 - HP15_232 0.61 +0.6 216,886 - HP15_232 0.69 +0.9 216,896 - HP15_232 0.70 -0.8 217,077 + HP15_232 0.85 -0.7 217,085 - HP15_232 0.86 +1.8 217,128 - HP15_232 0.89 -0.5 217,133 - HP15_232 0.89 -0.5 217,168 - -0.7 217,178 - -0.3 217,227 - -1.0 217,238 + -0.4 217,292 - +0.2 217,342 + -1.0 217,385 + HP15_233 0.16 -0.2 217,470 - HP15_233 0.31 -0.0 217,504 + HP15_233 0.37 -1.0 217,509 - HP15_233 0.38 +1.1 217,512 - HP15_233 0.38 -0.8 217,706 - HP15_233 0.72 -3.3 217,730 + HP15_233 0.76 +1.6 217,754 + HP15_233 0.80 +2.6 217,773 + HP15_233 0.84 +1.5 217,778 + HP15_233 0.84 +2.2 217,783 + HP15_233 0.85 +0.3 217,786 - HP15_233 0.86 +1.8 217,788 + HP15_233 0.86 +1.3 217,791 - HP15_233 0.87 +2.9 217,791 - HP15_233 0.87 +1.9 217,828 + +1.3 217,847 + +1.8 217,847 + -0.2 217,861 + +0.4 217,869 - +2.8 217,869 - -0.8 218,130 + +1.2
Or see this region's nucleotide sequence