Experiment: D-Alanine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2161 and HP15_2162 are separated by 7 nucleotides HP15_2162 and HP15_2163 overlap by 1 nucleotides HP15_2163 and HP15_2164 overlap by 1 nucleotides
HP15_2161: HP15_2161 - sugar ABC transporter, permease protein, at 2,267,755 to 2,268,564
_2161
HP15_2162: HP15_2162 - sugar ABC transporter, permease protein, at 2,268,572 to 2,269,438
_2162
HP15_2163: HP15_2163 - sugar ABC transporter, ATP-binding protein, at 2,269,438 to 2,270,538
_2163
HP15_2164: HP15_2164 - ATP-binding protein of sugar ABC transporter, at 2,270,538 to 2,271,632
_2164
Position (kb)
2269
2270
2271 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2268.438 kb on + strand, within HP15_2161 at 2268.438 kb on + strand, within HP15_2161 at 2268.438 kb on + strand, within HP15_2161 at 2268.438 kb on + strand, within HP15_2161 at 2268.446 kb on - strand, within HP15_2161 at 2268.446 kb on - strand, within HP15_2161 at 2268.751 kb on + strand, within HP15_2162 at 2268.819 kb on + strand, within HP15_2162 at 2268.916 kb on + strand, within HP15_2162 at 2268.916 kb on + strand, within HP15_2162 at 2268.921 kb on + strand, within HP15_2162 at 2268.929 kb on - strand, within HP15_2162 at 2269.010 kb on + strand, within HP15_2162 at 2269.018 kb on - strand, within HP15_2162 at 2269.177 kb on - strand, within HP15_2162 at 2269.182 kb on + strand, within HP15_2162 at 2269.276 kb on + strand, within HP15_2162 at 2269.280 kb on + strand, within HP15_2162 at 2269.312 kb on - strand, within HP15_2162 at 2269.421 kb on + strand at 2269.467 kb on - strand at 2269.516 kb on - strand at 2269.573 kb on - strand, within HP15_2163 at 2269.612 kb on + strand, within HP15_2163 at 2269.846 kb on - strand, within HP15_2163 at 2269.856 kb on - strand, within HP15_2163 at 2269.902 kb on + strand, within HP15_2163 at 2269.928 kb on + strand, within HP15_2163 at 2269.929 kb on - strand, within HP15_2163 at 2270.012 kb on - strand, within HP15_2163 at 2270.041 kb on - strand, within HP15_2163 at 2270.064 kb on + strand, within HP15_2163 at 2270.366 kb on - strand, within HP15_2163 at 2270.404 kb on + strand, within HP15_2163 at 2270.412 kb on - strand, within HP15_2163 at 2270.490 kb on + strand at 2270.649 kb on + strand, within HP15_2164 at 2270.722 kb on + strand, within HP15_2164 at 2270.736 kb on + strand, within HP15_2164 at 2270.955 kb on + strand, within HP15_2164 at 2271.072 kb on + strand, within HP15_2164 at 2271.074 kb on + strand, within HP15_2164 at 2271.082 kb on - strand, within HP15_2164 at 2271.084 kb on - strand, within HP15_2164 at 2271.115 kb on + strand, within HP15_2164 at 2271.201 kb on + strand, within HP15_2164 at 2271.209 kb on - strand, within HP15_2164 at 2271.216 kb on - strand, within HP15_2164 at 2271.218 kb on + strand, within HP15_2164 at 2271.234 kb on - strand, within HP15_2164 at 2271.260 kb on - strand, within HP15_2164 at 2271.362 kb on + strand, within HP15_2164 at 2271.484 kb on - strand, within HP15_2164 at 2271.484 kb on - strand, within HP15_2164 at 2271.521 kb on + strand, within HP15_2164
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine as (N) remove 2,268,438 + HP15_2161 0.84 -0.5 2,268,438 + HP15_2161 0.84 -0.2 2,268,438 + HP15_2161 0.84 +0.1 2,268,438 + HP15_2161 0.84 +1.3 2,268,446 - HP15_2161 0.85 -0.1 2,268,446 - HP15_2161 0.85 -0.4 2,268,751 + HP15_2162 0.21 -2.1 2,268,819 + HP15_2162 0.28 +1.4 2,268,916 + HP15_2162 0.40 -0.4 2,268,916 + HP15_2162 0.40 +1.1 2,268,921 + HP15_2162 0.40 +0.2 2,268,929 - HP15_2162 0.41 -0.5 2,269,010 + HP15_2162 0.51 +0.1 2,269,018 - HP15_2162 0.51 -0.4 2,269,177 - HP15_2162 0.70 +1.2 2,269,182 + HP15_2162 0.70 +1.3 2,269,276 + HP15_2162 0.81 -0.2 2,269,280 + HP15_2162 0.82 -0.7 2,269,312 - HP15_2162 0.85 -0.5 2,269,421 + +2.0 2,269,467 - -0.0 2,269,516 - -0.8 2,269,573 - HP15_2163 0.12 +1.9 2,269,612 + HP15_2163 0.16 -0.9 2,269,846 - HP15_2163 0.37 +1.8 2,269,856 - HP15_2163 0.38 +0.1 2,269,902 + HP15_2163 0.42 +0.2 2,269,928 + HP15_2163 0.45 +0.1 2,269,929 - HP15_2163 0.45 +0.2 2,270,012 - HP15_2163 0.52 +1.8 2,270,041 - HP15_2163 0.55 -0.1 2,270,064 + HP15_2163 0.57 -0.4 2,270,366 - HP15_2163 0.84 +1.1 2,270,404 + HP15_2163 0.88 +0.6 2,270,412 - HP15_2163 0.88 -1.4 2,270,490 + -0.5 2,270,649 + HP15_2164 0.10 +1.6 2,270,722 + HP15_2164 0.17 -0.3 2,270,736 + HP15_2164 0.18 -0.1 2,270,955 + HP15_2164 0.38 -0.8 2,271,072 + HP15_2164 0.49 -0.4 2,271,074 + HP15_2164 0.49 +0.3 2,271,082 - HP15_2164 0.50 +2.4 2,271,084 - HP15_2164 0.50 +1.7 2,271,115 + HP15_2164 0.53 -1.0 2,271,201 + HP15_2164 0.61 +0.2 2,271,209 - HP15_2164 0.61 +1.7 2,271,216 - HP15_2164 0.62 +1.1 2,271,218 + HP15_2164 0.62 -2.5 2,271,234 - HP15_2164 0.64 +1.7 2,271,260 - HP15_2164 0.66 -0.8 2,271,362 + HP15_2164 0.75 -1.5 2,271,484 - HP15_2164 0.86 +0.8 2,271,484 - HP15_2164 0.86 +1.5 2,271,521 + HP15_2164 0.90 -0.1
Or see this region's nucleotide sequence