Strain Fitness in Marinobacter adhaerens HP15 around HP15_1910

Experiment: D-Alanine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1909 and HP15_1910 are separated by 455 nucleotidesHP15_1910 and HP15_1911 are separated by 39 nucleotides HP15_1909: HP15_1909 - fibronectin, type III domain protein-like protein, at 2,020,093 to 2,021,283 _1909 HP15_1910: HP15_1910 - TPR/glycosyl transferase domain protein, at 2,021,739 to 2,023,139 _1910 HP15_1911: HP15_1911 - beta 1,4-N-acetylgalactosaminyltransferase-transferase-III-like protein, at 2,023,179 to 2,025,203 _1911 Position (kb) 2021 2022 2023 2024Strain fitness (log2 ratio) -2 -1 0 1 2at 2020.828 kb on - strand, within HP15_1909at 2021.037 kb on + strand, within HP15_1909at 2021.329 kb on + strandat 2021.420 kb on + strandat 2021.428 kb on - strandat 2021.491 kb on - strandat 2021.560 kb on - strandat 2021.595 kb on - strandat 2021.772 kb on + strandat 2021.950 kb on - strand, within HP15_1910at 2022.069 kb on - strand, within HP15_1910at 2022.163 kb on + strand, within HP15_1910at 2022.273 kb on - strand, within HP15_1910at 2022.405 kb on - strand, within HP15_1910at 2022.437 kb on + strand, within HP15_1910at 2022.440 kb on - strand, within HP15_1910at 2022.447 kb on + strand, within HP15_1910at 2022.652 kb on - strand, within HP15_1910at 2022.764 kb on - strand, within HP15_1910at 2022.859 kb on + strandat 2022.941 kb on - strand, within HP15_1910at 2022.979 kb on + strand, within HP15_1910at 2023.100 kb on - strandat 2023.133 kb on + strandat 2023.188 kb on + strandat 2023.269 kb on + strandat 2023.306 kb on - strandat 2023.408 kb on - strand, within HP15_1911at 2023.415 kb on + strand, within HP15_1911at 2023.415 kb on + strand, within HP15_1911at 2023.556 kb on + strand, within HP15_1911at 2023.575 kb on - strand, within HP15_1911at 2023.610 kb on - strand, within HP15_1911at 2023.642 kb on - strand, within HP15_1911at 2023.776 kb on - strand, within HP15_1911at 2023.845 kb on - strand, within HP15_1911at 2023.872 kb on + strand, within HP15_1911at 2023.872 kb on + strand, within HP15_1911at 2023.872 kb on + strand, within HP15_1911at 2023.872 kb on + strand, within HP15_1911at 2023.872 kb on + strand, within HP15_1911at 2023.880 kb on - strand, within HP15_1911at 2023.880 kb on - strand, within HP15_1911at 2023.880 kb on - strand, within HP15_1911at 2023.880 kb on - strand, within HP15_1911at 2024.036 kb on - strand, within HP15_1911at 2024.128 kb on + strand, within HP15_1911

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine as (N)
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2,020,828 - HP15_1909 0.62 -0.9
2,021,037 + HP15_1909 0.79 -1.2
2,021,329 + -0.9
2,021,420 + -0.6
2,021,428 - -0.0
2,021,491 - -2.1
2,021,560 - +2.5
2,021,595 - +1.6
2,021,772 + +1.6
2,021,950 - HP15_1910 0.15 +1.9
2,022,069 - HP15_1910 0.24 -0.8
2,022,163 + HP15_1910 0.30 +1.9
2,022,273 - HP15_1910 0.38 -0.5
2,022,405 - HP15_1910 0.48 +1.9
2,022,437 + HP15_1910 0.50 -0.4
2,022,440 - HP15_1910 0.50 -0.8
2,022,447 + HP15_1910 0.51 +0.9
2,022,652 - HP15_1910 0.65 +2.0
2,022,764 - HP15_1910 0.73 +0.3
2,022,859 + +2.1
2,022,941 - HP15_1910 0.86 -0.2
2,022,979 + HP15_1910 0.89 +0.2
2,023,100 - +0.7
2,023,133 + -0.5
2,023,188 + +0.5
2,023,269 + -0.7
2,023,306 - +0.2
2,023,408 - HP15_1911 0.11 +0.5
2,023,415 + HP15_1911 0.12 -1.4
2,023,415 + HP15_1911 0.12 +1.8
2,023,556 + HP15_1911 0.19 +0.5
2,023,575 - HP15_1911 0.20 -0.8
2,023,610 - HP15_1911 0.21 -1.5
2,023,642 - HP15_1911 0.23 -0.6
2,023,776 - HP15_1911 0.29 +0.2
2,023,845 - HP15_1911 0.33 -0.0
2,023,872 + HP15_1911 0.34 -1.0
2,023,872 + HP15_1911 0.34 -1.2
2,023,872 + HP15_1911 0.34 +1.1
2,023,872 + HP15_1911 0.34 -0.1
2,023,872 + HP15_1911 0.34 +1.2
2,023,880 - HP15_1911 0.35 -0.7
2,023,880 - HP15_1911 0.35 +2.7
2,023,880 - HP15_1911 0.35 +1.7
2,023,880 - HP15_1911 0.35 -0.4
2,024,036 - HP15_1911 0.42 -0.6
2,024,128 + HP15_1911 0.47 -1.2

Or see this region's nucleotide sequence