Experiment: D-Alanine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1301 and HP15_1302 overlap by 4 nucleotides HP15_1302 and HP15_1303 are separated by 69 nucleotides HP15_1303 and HP15_1304 are separated by 12 nucleotides HP15_1304 and HP15_1305 are separated by 0 nucleotides
HP15_1301: HP15_1301 - phosphatidylglycerophosphate synthase, at 1,361,873 to 1,362,427
_1301
HP15_1302: HP15_1302 - DNA replication initiation factor, at 1,362,424 to 1,363,122
_1302
HP15_1303: HP15_1303 - chromosome partitioning protein, ParA family, at 1,363,192 to 1,363,980
_1303
HP15_1304: HP15_1304 - protein containing DUF446, at 1,363,993 to 1,364,328
_1304
HP15_1305: HP15_1305 - nicotinate-nucleotide pyrophosphorylase, at 1,364,329 to 1,365,168
_1305
Position (kb)
1363
1364 Strain fitness (log2 ratio)
-1
0
1
2 at 1362.202 kb on + strand, within HP15_1301 at 1362.202 kb on + strand, within HP15_1301 at 1362.316 kb on + strand, within HP15_1301 at 1362.321 kb on + strand, within HP15_1301 at 1363.165 kb on + strand at 1363.173 kb on - strand at 1363.232 kb on - strand at 1363.232 kb on - strand at 1363.289 kb on - strand, within HP15_1303 at 1363.361 kb on - strand, within HP15_1303 at 1363.393 kb on + strand, within HP15_1303 at 1363.457 kb on + strand, within HP15_1303 at 1363.636 kb on - strand, within HP15_1303 at 1363.669 kb on + strand, within HP15_1303 at 1363.671 kb on + strand, within HP15_1303 at 1363.677 kb on - strand, within HP15_1303 at 1363.679 kb on - strand, within HP15_1303 at 1363.679 kb on - strand, within HP15_1303 at 1363.679 kb on - strand, within HP15_1303 at 1363.751 kb on + strand, within HP15_1303 at 1363.980 kb on + strand at 1363.997 kb on - strand at 1364.069 kb on + strand, within HP15_1304 at 1364.321 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine as (N) remove 1,362,202 + HP15_1301 0.59 +1.9 1,362,202 + HP15_1301 0.59 -1.0 1,362,316 + HP15_1301 0.80 -0.2 1,362,321 + HP15_1301 0.81 +1.2 1,363,165 + -1.2 1,363,173 - +1.4 1,363,232 - -0.4 1,363,232 - +0.4 1,363,289 - HP15_1303 0.12 +0.6 1,363,361 - HP15_1303 0.21 -0.3 1,363,393 + HP15_1303 0.25 +0.0 1,363,457 + HP15_1303 0.34 +1.6 1,363,636 - HP15_1303 0.56 +1.4 1,363,669 + HP15_1303 0.60 -0.5 1,363,671 + HP15_1303 0.61 +1.4 1,363,677 - HP15_1303 0.61 +1.7 1,363,679 - HP15_1303 0.62 +0.2 1,363,679 - HP15_1303 0.62 -0.3 1,363,679 - HP15_1303 0.62 -1.3 1,363,751 + HP15_1303 0.71 +1.9 1,363,980 + -0.9 1,363,997 - -0.4 1,364,069 + HP15_1304 0.23 +0.3 1,364,321 - -0.2
Or see this region's nucleotide sequence