Strain Fitness in Marinobacter adhaerens HP15 around HP15_1303

Experiment: D-Alanine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1301 and HP15_1302 overlap by 4 nucleotidesHP15_1302 and HP15_1303 are separated by 69 nucleotidesHP15_1303 and HP15_1304 are separated by 12 nucleotidesHP15_1304 and HP15_1305 are separated by 0 nucleotides HP15_1301: HP15_1301 - phosphatidylglycerophosphate synthase, at 1,361,873 to 1,362,427 _1301 HP15_1302: HP15_1302 - DNA replication initiation factor, at 1,362,424 to 1,363,122 _1302 HP15_1303: HP15_1303 - chromosome partitioning protein, ParA family, at 1,363,192 to 1,363,980 _1303 HP15_1304: HP15_1304 - protein containing DUF446, at 1,363,993 to 1,364,328 _1304 HP15_1305: HP15_1305 - nicotinate-nucleotide pyrophosphorylase, at 1,364,329 to 1,365,168 _1305 Position (kb) 1363 1364Strain fitness (log2 ratio) -1 0 1 2at 1362.202 kb on + strand, within HP15_1301at 1362.202 kb on + strand, within HP15_1301at 1362.316 kb on + strand, within HP15_1301at 1362.321 kb on + strand, within HP15_1301at 1363.165 kb on + strandat 1363.173 kb on - strandat 1363.232 kb on - strandat 1363.232 kb on - strandat 1363.289 kb on - strand, within HP15_1303at 1363.361 kb on - strand, within HP15_1303at 1363.393 kb on + strand, within HP15_1303at 1363.457 kb on + strand, within HP15_1303at 1363.636 kb on - strand, within HP15_1303at 1363.669 kb on + strand, within HP15_1303at 1363.671 kb on + strand, within HP15_1303at 1363.677 kb on - strand, within HP15_1303at 1363.679 kb on - strand, within HP15_1303at 1363.679 kb on - strand, within HP15_1303at 1363.679 kb on - strand, within HP15_1303at 1363.751 kb on + strand, within HP15_1303at 1363.980 kb on + strandat 1363.997 kb on - strandat 1364.069 kb on + strand, within HP15_1304at 1364.321 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine as (N)
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1,362,202 + HP15_1301 0.59 +1.9
1,362,202 + HP15_1301 0.59 -1.0
1,362,316 + HP15_1301 0.80 -0.2
1,362,321 + HP15_1301 0.81 +1.2
1,363,165 + -1.2
1,363,173 - +1.4
1,363,232 - -0.4
1,363,232 - +0.4
1,363,289 - HP15_1303 0.12 +0.6
1,363,361 - HP15_1303 0.21 -0.3
1,363,393 + HP15_1303 0.25 +0.0
1,363,457 + HP15_1303 0.34 +1.6
1,363,636 - HP15_1303 0.56 +1.4
1,363,669 + HP15_1303 0.60 -0.5
1,363,671 + HP15_1303 0.61 +1.4
1,363,677 - HP15_1303 0.61 +1.7
1,363,679 - HP15_1303 0.62 +0.2
1,363,679 - HP15_1303 0.62 -0.3
1,363,679 - HP15_1303 0.62 -1.3
1,363,751 + HP15_1303 0.71 +1.9
1,363,980 + -0.9
1,363,997 - -0.4
1,364,069 + HP15_1304 0.23 +0.3
1,364,321 - -0.2

Or see this region's nucleotide sequence