Strain Fitness in Shewanella loihica PV-4 around Shew_2637

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_R0090 and Shew_2636 are separated by 104 nucleotidesShew_2636 and Shew_2637 are separated by 81 nucleotidesShew_2637 and dapD are separated by 35 nucleotides Shew_R0090: Shew_R0090 - no description, at 3,110,419 to 3,110,571 _R0090 Shew_2636: Shew_2636 - methionine aminopeptidase (RefSeq), at 3,110,676 to 3,111,473 _2636 Shew_2637: Shew_2637 - PII uridylyl-transferase (RefSeq), at 3,111,555 to 3,114,128 _2637 Shew_2638: dapD - 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase (RefSeq), at 3,114,164 to 3,114,988 dapD Position (kb) 3111 3112 3113 3114 3115Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3111.504 kb on + strandat 3111.525 kb on + strandat 3111.783 kb on + strandat 3112.140 kb on - strand, within Shew_2637at 3112.644 kb on - strand, within Shew_2637at 3112.651 kb on + strand, within Shew_2637at 3113.164 kb on + strand, within Shew_2637at 3113.283 kb on - strand, within Shew_2637at 3113.384 kb on - strand, within Shew_2637at 3113.597 kb on + strand, within Shew_2637

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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3,111,504 + +0.5
3,111,525 + +0.1
3,111,783 + -4.1
3,112,140 - Shew_2637 0.23 +0.3
3,112,644 - Shew_2637 0.42 -3.4
3,112,651 + Shew_2637 0.43 -3.2
3,113,164 + Shew_2637 0.63 +1.5
3,113,283 - Shew_2637 0.67 -3.7
3,113,384 - Shew_2637 0.71 -3.4
3,113,597 + Shew_2637 0.79 -2.8

Or see this region's nucleotide sequence