Strain Fitness in Shewanella loihica PV-4 around Shew_2576

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2574 and Shew_2575 are separated by 46 nucleotidesShew_2575 and Shew_2576 are separated by 12 nucleotidesShew_2576 and Shew_2577 are separated by 90 nucleotides Shew_2574: Shew_2574 - pyruvate carboxyltransferase (RefSeq), at 3,034,273 to 3,035,178 _2574 Shew_2575: Shew_2575 - 3-oxoacid CoA-transferase, A subunit (RefSeq), at 3,035,225 to 3,035,926 _2575 Shew_2576: Shew_2576 - 3-oxoacid CoA-transferase, B subunit (RefSeq), at 3,035,939 to 3,036,595 _2576 Shew_2577: Shew_2577 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 3,036,686 to 3,038,260 _2577 Position (kb) 3035 3036 3037Strain fitness (log2 ratio) -3 -2 -1 0 1at 3035.162 kb on - strandat 3036.139 kb on - strand, within Shew_2576at 3036.202 kb on - strand, within Shew_2576at 3036.597 kb on - strandat 3036.786 kb on + strandat 3036.786 kb on - strandat 3036.804 kb on - strandat 3036.893 kb on - strand, within Shew_2577at 3037.329 kb on - strand, within Shew_2577at 3037.381 kb on - strand, within Shew_2577

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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3,035,162 - +0.7
3,036,139 - Shew_2576 0.30 +0.7
3,036,202 - Shew_2576 0.40 +0.9
3,036,597 - +1.1
3,036,786 + -3.1
3,036,786 - +1.1
3,036,804 - +0.2
3,036,893 - Shew_2577 0.13 -1.0
3,037,329 - Shew_2577 0.41 -0.2
3,037,381 - Shew_2577 0.44 -0.9

Or see this region's nucleotide sequence