Strain Fitness in Shewanella loihica PV-4 around Shew_2397

Experiment: D-Maltose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_2396 and Shew_2397 are separated by 103 nucleotidesShew_2397 and Shew_2398 are separated by 63 nucleotides Shew_2396: Shew_2396 - hypothetical protein (RefSeq), at 2,811,189 to 2,811,413 _2396 Shew_2397: Shew_2397 - hypothetical protein (RefSeq), at 2,811,517 to 2,812,434 _2397 Shew_2398: Shew_2398 - hypothetical protein (RefSeq), at 2,812,498 to 2,813,667 _2398 Position (kb) 2811 2812 2813Strain fitness (log2 ratio) -2 -1 0 1at 2810.883 kb on - strandat 2810.913 kb on + strandat 2811.173 kb on + strandat 2811.213 kb on + strand, within Shew_2396at 2811.228 kb on - strand, within Shew_2396at 2811.625 kb on + strand, within Shew_2397at 2812.165 kb on + strand, within Shew_2397at 2812.218 kb on - strand, within Shew_2397at 2812.568 kb on + strandat 2812.594 kb on - strandat 2812.622 kb on + strand, within Shew_2398at 2813.175 kb on - strand, within Shew_2398at 2813.258 kb on + strand, within Shew_2398at 2813.266 kb on - strand, within Shew_2398

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
remove
2,810,883 - -0.1
2,810,913 + +1.3
2,811,173 + -0.1
2,811,213 + Shew_2396 0.11 +1.4
2,811,228 - Shew_2396 0.17 -0.5
2,811,625 + Shew_2397 0.12 -0.9
2,812,165 + Shew_2397 0.71 -0.7
2,812,218 - Shew_2397 0.76 +0.1
2,812,568 + +0.7
2,812,594 - -2.2
2,812,622 + Shew_2398 0.11 -0.0
2,813,175 - Shew_2398 0.58 -1.4
2,813,258 + Shew_2398 0.65 -2.3
2,813,266 - Shew_2398 0.66 +0.9

Or see this region's nucleotide sequence