Strain Fitness in Shewanella loihica PV-4 around Shew_2236

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2235 and Shew_2236 are separated by 384 nucleotidesShew_2236 and Shew_2237 are separated by 120 nucleotidesShew_2237 and Shew_2238 are separated by 94 nucleotidesShew_2238 and Shew_2239 are separated by 102 nucleotides Shew_2235: Shew_2235 - DNA polymerase III, subunits gamma and tau (RefSeq), at 2,611,845 to 2,615,186 _2235 Shew_2236: Shew_2236 - adenine phosphoribosyltransferase (RefSeq), at 2,615,571 to 2,616,164 _2236 Shew_2237: Shew_2237 - hypothetical protein (RefSeq), at 2,616,285 to 2,616,653 _2237 Shew_2238: Shew_2238 - hypothetical protein (RefSeq), at 2,616,748 to 2,616,870 _2238 Shew_2239: Shew_2239 - hypothetical protein (RefSeq), at 2,616,973 to 2,617,716 _2239 Position (kb) 2615 2616 2617Strain fitness (log2 ratio) -3 -2 -1 0 1at 2615.357 kb on - strandat 2615.360 kb on + strandat 2615.383 kb on - strandat 2615.650 kb on - strand, within Shew_2236at 2615.796 kb on + strand, within Shew_2236at 2615.930 kb on + strand, within Shew_2236at 2616.206 kb on + strandat 2616.386 kb on - strand, within Shew_2237at 2616.452 kb on + strand, within Shew_2237at 2616.872 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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2,615,357 - -1.2
2,615,360 + -0.6
2,615,383 - -1.3
2,615,650 - Shew_2236 0.13 +0.0
2,615,796 + Shew_2236 0.38 -0.3
2,615,930 + Shew_2236 0.60 +0.6
2,616,206 + +0.1
2,616,386 - Shew_2237 0.27 -2.9
2,616,452 + Shew_2237 0.45 +0.5
2,616,872 - +0.7

Or see this region's nucleotide sequence