Strain Fitness in Shewanella loihica PV-4 around Shew_2148

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2147 and Shew_2148 are separated by 229 nucleotidesShew_2148 and Shew_2149 are separated by 86 nucleotides Shew_2147: Shew_2147 - hypothetical protein (RefSeq), at 2,493,419 to 2,494,345 _2147 Shew_2148: Shew_2148 - hypothetical protein (RefSeq), at 2,494,575 to 2,494,982 _2148 Shew_2149: Shew_2149 - ABC transporter (RefSeq), at 2,495,069 to 2,495,929 _2149 Position (kb) 2494 2495Strain fitness (log2 ratio) -3 -2 -1 0 1at 2494.195 kb on + strand, within Shew_2147at 2494.311 kb on - strandat 2494.378 kb on + strandat 2494.386 kb on - strandat 2494.684 kb on - strand, within Shew_2148at 2495.032 kb on + strandat 2495.186 kb on - strand, within Shew_2149at 2495.668 kb on + strand, within Shew_2149at 2495.776 kb on - strand, within Shew_2149at 2495.881 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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2,494,195 + Shew_2147 0.84 -1.1
2,494,311 - -3.0
2,494,378 + -0.1
2,494,386 - -0.4
2,494,684 - Shew_2148 0.27 +0.1
2,495,032 + -0.1
2,495,186 - Shew_2149 0.14 -1.7
2,495,668 + Shew_2149 0.70 -0.3
2,495,776 - Shew_2149 0.82 -0.4
2,495,881 - +0.2

Or see this region's nucleotide sequence