Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_R0074 and Shew_R0075 are separated by 42 nucleotides Shew_R0075 and Shew_R0076 are separated by 26 nucleotides Shew_R0076 and Shew_R0077 are separated by 24 nucleotides Shew_R0077 and Shew_2065 are separated by 116 nucleotides Shew_2065 and Shew_2066 are separated by 83 nucleotides Shew_2066 and Shew_2067 are separated by 2 nucleotides
Shew_R0074: Shew_R0074 - tRNA-Asn (RefSeq), at 2,385,603 to 2,385,678
_R0074
Shew_R0075: Shew_R0075 - tRNA-Asn (RefSeq), at 2,385,721 to 2,385,796
_R0075
Shew_R0076: Shew_R0076 - tRNA-Asn (RefSeq), at 2,385,823 to 2,385,898
_R0076
Shew_R0077: Shew_R0077 - tRNA-Asn (RefSeq), at 2,385,923 to 2,385,998
_R0077
Shew_2065: Shew_2065 - diguanylate cyclase/phosphodiesterase (RefSeq), at 2,386,115 to 2,388,043
_2065
Shew_2066: Shew_2066 - Na(+)-translocating NADH-quinone reductase subunit E (RefSeq), at 2,388,127 to 2,388,705
_2066
Shew_2067: Shew_2067 - electron transport complex, RnfABCDGE type, B subunit (RefSeq), at 2,388,708 to 2,389,277
_2067
Position (kb)
2386
2387
2388
2389 Strain fitness (log2 ratio)
-1
0
1 at 2385.307 kb on + strand at 2385.371 kb on + strand at 2385.393 kb on + strand at 2385.881 kb on + strand, within Shew_R0076 at 2386.613 kb on + strand, within Shew_2065 at 2386.752 kb on - strand, within Shew_2065 at 2386.759 kb on + strand, within Shew_2065 at 2387.466 kb on + strand, within Shew_2065 at 2387.971 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 2,385,307 + +0.7 2,385,371 + -0.2 2,385,393 + -1.2 2,385,881 + Shew_R0076 0.76 -0.4 2,386,613 + Shew_2065 0.26 +0.2 2,386,752 - Shew_2065 0.33 +0.6 2,386,759 + Shew_2065 0.33 +0.2 2,387,466 + Shew_2065 0.70 -0.0 2,387,971 - +0.5
Or see this region's nucleotide sequence