Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1628 and Shew_1629 are separated by 39 nucleotides Shew_1629 and Shew_1630 overlap by 8 nucleotides Shew_1630 and Shew_1631 are separated by 75 nucleotides Shew_1631 and Shew_1632 are separated by 95 nucleotides
Shew_1628: Shew_1628 - acylphosphatase (RefSeq), at 1,861,653 to 1,861,922
_1628
Shew_1629: Shew_1629 - hypothetical protein (RefSeq), at 1,861,962 to 1,862,900
_1629
Shew_1630: Shew_1630 - transcription-repair coupling factor (RefSeq), at 1,862,893 to 1,866,375
_1630
Shew_1631: Shew_1631 - hypothetical protein (RefSeq), at 1,866,451 to 1,867,032
_1631
Shew_1632: Shew_1632 - LolC/E family lipoprotein releasing system, transmembrane protein (RefSeq), at 1,867,128 to 1,868,360
_1632
Position (kb) 1862
1863
1864
1865
1866
1867 Strain fitness (log2 ratio) -1
0
1
2
3 at 1862.387 kb on - strand, within Shew_1629 at 1865.318 kb on - strand, within Shew_1630 at 1865.719 kb on + strand, within Shew_1630 at 1866.327 kb on + strand at 1866.571 kb on + strand, within Shew_1631 at 1866.625 kb on - strand, within Shew_1631 at 1866.649 kb on + strand, within Shew_1631 at 1866.973 kb on - strand, within Shew_1631
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 1,862,387 - Shew_1629 0.45 +2.8 1,865,318 - Shew_1630 0.70 -0.5 1,865,719 + Shew_1630 0.81 +0.4 1,866,327 + +0.8 1,866,571 + Shew_1631 0.21 -0.7 1,866,625 - Shew_1631 0.30 +1.0 1,866,649 + Shew_1631 0.34 +0.6 1,866,973 - Shew_1631 0.90 -0.2
Or see this region's nucleotide sequence