Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1427 and Shew_1428 are separated by 28 nucleotides Shew_1428 and Shew_1429 are separated by 74 nucleotides Shew_1429 and Shew_1430 are separated by 12 nucleotides
Shew_1427: Shew_1427 - 3'(2'),5'-bisphosphate nucleotidase (RefSeq), at 1,643,151 to 1,643,945
_1427
Shew_1428: Shew_1428 - fructokinase (RefSeq), at 1,643,974 to 1,644,864
_1428
Shew_1429: Shew_1429 - hypothetical protein (RefSeq), at 1,644,939 to 1,645,679
_1429
Shew_1430: Shew_1430 - hypothetical protein (RefSeq), at 1,645,692 to 1,646,360
_1430
Position (kb) 1643
1644
1645 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 1643.006 kb on - strand at 1643.031 kb on - strand at 1643.292 kb on + strand, within Shew_1427 at 1643.691 kb on - strand, within Shew_1427 at 1643.714 kb on - strand, within Shew_1427 at 1643.875 kb on + strand at 1644.477 kb on + strand, within Shew_1428 at 1644.920 kb on - strand at 1645.179 kb on + strand, within Shew_1429 at 1645.602 kb on - strand, within Shew_1429 at 1645.744 kb on + strand at 1645.744 kb on + strand at 1645.752 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 1,643,006 - -2.4 1,643,031 - -5.5 1,643,292 + Shew_1427 0.18 -2.9 1,643,691 - Shew_1427 0.68 -4.3 1,643,714 - Shew_1427 0.71 -3.4 1,643,875 + -2.2 1,644,477 + Shew_1428 0.56 -5.5 1,644,920 - +0.3 1,645,179 + Shew_1429 0.32 -0.2 1,645,602 - Shew_1429 0.89 -0.7 1,645,744 + -1.8 1,645,744 + -0.8 1,645,752 - +0.5
Or see this region's nucleotide sequence