Experiment: L-Phenylalanine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4036 and HP15_4037 overlap by 4 nucleotides HP15_4037 and HP15_4038 are separated by 9 nucleotides HP15_4038 and HP15_4039 are separated by 147 nucleotides HP15_4039 and HP15_4040 are separated by 46 nucleotides
HP15_4036: HP15_4036 - 4-hydroxy-2-ketovalerate aldolase, at 4,272,488 to 4,273,525
_4036
HP15_4037: HP15_4037 - hydratase/decarboxylase, at 4,273,522 to 4,274,316
_4037
HP15_4038: HP15_4038 - 4-oxalocrotonate tautomerase, at 4,274,326 to 4,274,517
_4038
HP15_4039: HP15_4039 - conserved hypothetical protein, at 4,274,665 to 4,275,264
_4039
HP15_4040: HP15_4040 - ketopantoate reductase ApbA/PanE, at 4,275,311 to 4,276,234
_4040
Position (kb)
4274
4275 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4273.332 kb on + strand, within HP15_4036 at 4273.337 kb on + strand, within HP15_4036 at 4273.350 kb on - strand, within HP15_4036 at 4273.404 kb on - strand, within HP15_4036 at 4273.526 kb on + strand at 4273.585 kb on + strand at 4273.593 kb on - strand at 4273.627 kb on + strand, within HP15_4037 at 4273.635 kb on - strand, within HP15_4037 at 4273.659 kb on - strand, within HP15_4037 at 4273.731 kb on + strand, within HP15_4037 at 4273.807 kb on + strand, within HP15_4037 at 4273.812 kb on + strand, within HP15_4037 at 4273.817 kb on + strand, within HP15_4037 at 4273.825 kb on - strand, within HP15_4037 at 4273.860 kb on - strand, within HP15_4037 at 4273.930 kb on + strand, within HP15_4037 at 4274.072 kb on + strand, within HP15_4037 at 4274.078 kb on + strand, within HP15_4037 at 4274.080 kb on - strand, within HP15_4037 at 4274.292 kb on - strand at 4274.292 kb on - strand at 4274.503 kb on + strand at 4274.505 kb on + strand at 4274.637 kb on - strand at 4274.701 kb on - strand at 4274.806 kb on - strand, within HP15_4039 at 4274.817 kb on - strand, within HP15_4039 at 4274.930 kb on + strand, within HP15_4039 at 4274.938 kb on - strand, within HP15_4039 at 4274.938 kb on - strand, within HP15_4039 at 4274.938 kb on - strand, within HP15_4039 at 4274.954 kb on + strand, within HP15_4039 at 4275.075 kb on + strand, within HP15_4039 at 4275.118 kb on + strand, within HP15_4039 at 4275.131 kb on - strand, within HP15_4039 at 4275.140 kb on + strand, within HP15_4039 at 4275.140 kb on + strand, within HP15_4039 at 4275.148 kb on - strand, within HP15_4039 at 4275.148 kb on - strand, within HP15_4039 at 4275.210 kb on - strand at 4275.217 kb on - strand at 4275.390 kb on - strand at 4275.404 kb on + strand, within HP15_4040 at 4275.413 kb on - strand, within HP15_4040
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine as (N) remove 4,273,332 + HP15_4036 0.81 +0.9 4,273,337 + HP15_4036 0.82 +0.1 4,273,350 - HP15_4036 0.83 -0.3 4,273,404 - HP15_4036 0.88 -0.7 4,273,526 + -0.5 4,273,585 + +1.7 4,273,593 - +0.9 4,273,627 + HP15_4037 0.13 -1.4 4,273,635 - HP15_4037 0.14 -0.4 4,273,659 - HP15_4037 0.17 -0.3 4,273,731 + HP15_4037 0.26 +0.2 4,273,807 + HP15_4037 0.36 +0.9 4,273,812 + HP15_4037 0.36 -0.4 4,273,817 + HP15_4037 0.37 +0.3 4,273,825 - HP15_4037 0.38 -1.0 4,273,860 - HP15_4037 0.43 -0.3 4,273,930 + HP15_4037 0.51 -0.7 4,274,072 + HP15_4037 0.69 +1.4 4,274,078 + HP15_4037 0.70 -0.5 4,274,080 - HP15_4037 0.70 +1.5 4,274,292 - -0.8 4,274,292 - +0.1 4,274,503 + +0.6 4,274,505 + +1.5 4,274,637 - +0.0 4,274,701 - -0.7 4,274,806 - HP15_4039 0.23 -0.9 4,274,817 - HP15_4039 0.25 -2.6 4,274,930 + HP15_4039 0.44 -0.1 4,274,938 - HP15_4039 0.46 -0.1 4,274,938 - HP15_4039 0.46 +0.2 4,274,938 - HP15_4039 0.46 +2.0 4,274,954 + HP15_4039 0.48 +0.3 4,275,075 + HP15_4039 0.68 +1.0 4,275,118 + HP15_4039 0.76 -0.2 4,275,131 - HP15_4039 0.78 -0.0 4,275,140 + HP15_4039 0.79 -1.3 4,275,140 + HP15_4039 0.79 -0.4 4,275,148 - HP15_4039 0.81 +0.0 4,275,148 - HP15_4039 0.81 +1.0 4,275,210 - -0.3 4,275,217 - +0.1 4,275,390 - +1.3 4,275,404 + HP15_4040 0.10 +0.5 4,275,413 - HP15_4040 0.11 -0.1
Or see this region's nucleotide sequence