Strain Fitness in Marinobacter adhaerens HP15 around HP15_4038

Experiment: L-Phenylalanine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_4036 and HP15_4037 overlap by 4 nucleotidesHP15_4037 and HP15_4038 are separated by 9 nucleotidesHP15_4038 and HP15_4039 are separated by 147 nucleotidesHP15_4039 and HP15_4040 are separated by 46 nucleotides HP15_4036: HP15_4036 - 4-hydroxy-2-ketovalerate aldolase, at 4,272,488 to 4,273,525 _4036 HP15_4037: HP15_4037 - hydratase/decarboxylase, at 4,273,522 to 4,274,316 _4037 HP15_4038: HP15_4038 - 4-oxalocrotonate tautomerase, at 4,274,326 to 4,274,517 _4038 HP15_4039: HP15_4039 - conserved hypothetical protein, at 4,274,665 to 4,275,264 _4039 HP15_4040: HP15_4040 - ketopantoate reductase ApbA/PanE, at 4,275,311 to 4,276,234 _4040 Position (kb) 4274 4275Strain fitness (log2 ratio) -2 -1 0 1 2at 4273.332 kb on + strand, within HP15_4036at 4273.337 kb on + strand, within HP15_4036at 4273.350 kb on - strand, within HP15_4036at 4273.404 kb on - strand, within HP15_4036at 4273.526 kb on + strandat 4273.585 kb on + strandat 4273.593 kb on - strandat 4273.627 kb on + strand, within HP15_4037at 4273.635 kb on - strand, within HP15_4037at 4273.659 kb on - strand, within HP15_4037at 4273.731 kb on + strand, within HP15_4037at 4273.807 kb on + strand, within HP15_4037at 4273.812 kb on + strand, within HP15_4037at 4273.817 kb on + strand, within HP15_4037at 4273.825 kb on - strand, within HP15_4037at 4273.860 kb on - strand, within HP15_4037at 4273.930 kb on + strand, within HP15_4037at 4274.072 kb on + strand, within HP15_4037at 4274.078 kb on + strand, within HP15_4037at 4274.080 kb on - strand, within HP15_4037at 4274.292 kb on - strandat 4274.292 kb on - strandat 4274.503 kb on + strandat 4274.505 kb on + strandat 4274.637 kb on - strandat 4274.701 kb on - strandat 4274.806 kb on - strand, within HP15_4039at 4274.817 kb on - strand, within HP15_4039at 4274.930 kb on + strand, within HP15_4039at 4274.938 kb on - strand, within HP15_4039at 4274.938 kb on - strand, within HP15_4039at 4274.938 kb on - strand, within HP15_4039at 4274.954 kb on + strand, within HP15_4039at 4275.075 kb on + strand, within HP15_4039at 4275.118 kb on + strand, within HP15_4039at 4275.131 kb on - strand, within HP15_4039at 4275.140 kb on + strand, within HP15_4039at 4275.140 kb on + strand, within HP15_4039at 4275.148 kb on - strand, within HP15_4039at 4275.148 kb on - strand, within HP15_4039at 4275.210 kb on - strandat 4275.217 kb on - strandat 4275.390 kb on - strandat 4275.404 kb on + strand, within HP15_4040at 4275.413 kb on - strand, within HP15_4040

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine as (N)
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4,273,332 + HP15_4036 0.81 +0.9
4,273,337 + HP15_4036 0.82 +0.1
4,273,350 - HP15_4036 0.83 -0.3
4,273,404 - HP15_4036 0.88 -0.7
4,273,526 + -0.5
4,273,585 + +1.7
4,273,593 - +0.9
4,273,627 + HP15_4037 0.13 -1.4
4,273,635 - HP15_4037 0.14 -0.4
4,273,659 - HP15_4037 0.17 -0.3
4,273,731 + HP15_4037 0.26 +0.2
4,273,807 + HP15_4037 0.36 +0.9
4,273,812 + HP15_4037 0.36 -0.4
4,273,817 + HP15_4037 0.37 +0.3
4,273,825 - HP15_4037 0.38 -1.0
4,273,860 - HP15_4037 0.43 -0.3
4,273,930 + HP15_4037 0.51 -0.7
4,274,072 + HP15_4037 0.69 +1.4
4,274,078 + HP15_4037 0.70 -0.5
4,274,080 - HP15_4037 0.70 +1.5
4,274,292 - -0.8
4,274,292 - +0.1
4,274,503 + +0.6
4,274,505 + +1.5
4,274,637 - +0.0
4,274,701 - -0.7
4,274,806 - HP15_4039 0.23 -0.9
4,274,817 - HP15_4039 0.25 -2.6
4,274,930 + HP15_4039 0.44 -0.1
4,274,938 - HP15_4039 0.46 -0.1
4,274,938 - HP15_4039 0.46 +0.2
4,274,938 - HP15_4039 0.46 +2.0
4,274,954 + HP15_4039 0.48 +0.3
4,275,075 + HP15_4039 0.68 +1.0
4,275,118 + HP15_4039 0.76 -0.2
4,275,131 - HP15_4039 0.78 -0.0
4,275,140 + HP15_4039 0.79 -1.3
4,275,140 + HP15_4039 0.79 -0.4
4,275,148 - HP15_4039 0.81 +0.0
4,275,148 - HP15_4039 0.81 +1.0
4,275,210 - -0.3
4,275,217 - +0.1
4,275,390 - +1.3
4,275,404 + HP15_4040 0.10 +0.5
4,275,413 - HP15_4040 0.11 -0.1

Or see this region's nucleotide sequence