Strain Fitness in Marinobacter adhaerens HP15 around HP15_4017

Experiment: L-Phenylalanine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_4016 and HP15_4017 are separated by 168 nucleotidesHP15_4017 and HP15_4018 are separated by 83 nucleotidesHP15_4018 and HP15_4019 are separated by 75 nucleotides HP15_4016: HP15_4016 - deoxyribodipyrimidine photolyase, at 4,249,978 to 4,251,300 _4016 HP15_4017: HP15_4017 - formaldehyde dehydrogenase (glutathione-dependent), at 4,251,469 to 4,252,581 _4017 HP15_4018: HP15_4018 - membrane protein containing antibiotic biosynthesis monooxygenase domain, at 4,252,665 to 4,253,261 _4018 HP15_4019: HP15_4019 - protein containing DUF1329, at 4,253,337 to 4,254,626 _4019 Position (kb) 4251 4252 4253Strain fitness (log2 ratio) -2 -1 0 1at 4250.578 kb on + strand, within HP15_4016at 4250.581 kb on - strand, within HP15_4016at 4250.636 kb on + strand, within HP15_4016at 4250.701 kb on - strand, within HP15_4016at 4250.805 kb on + strand, within HP15_4016at 4250.825 kb on - strand, within HP15_4016at 4250.916 kb on - strand, within HP15_4016at 4251.020 kb on - strand, within HP15_4016at 4251.020 kb on - strand, within HP15_4016at 4251.101 kb on - strand, within HP15_4016at 4251.160 kb on - strand, within HP15_4016at 4251.166 kb on + strand, within HP15_4016at 4251.210 kb on + strandat 4251.217 kb on - strandat 4251.276 kb on + strandat 4251.283 kb on + strandat 4251.471 kb on + strandat 4251.559 kb on + strandat 4251.602 kb on + strand, within HP15_4017at 4251.631 kb on + strand, within HP15_4017at 4251.794 kb on - strand, within HP15_4017at 4251.818 kb on - strand, within HP15_4017at 4251.884 kb on + strand, within HP15_4017at 4251.949 kb on + strand, within HP15_4017at 4252.003 kb on + strand, within HP15_4017at 4252.003 kb on + strand, within HP15_4017at 4252.005 kb on + strand, within HP15_4017at 4252.011 kb on - strand, within HP15_4017at 4252.011 kb on - strand, within HP15_4017at 4252.011 kb on - strand, within HP15_4017at 4252.011 kb on - strand, within HP15_4017at 4252.011 kb on - strand, within HP15_4017at 4252.011 kb on - strand, within HP15_4017at 4252.011 kb on - strand, within HP15_4017at 4252.011 kb on - strand, within HP15_4017at 4252.021 kb on + strand, within HP15_4017at 4252.029 kb on - strand, within HP15_4017at 4252.233 kb on + strand, within HP15_4017at 4252.266 kb on - strand, within HP15_4017at 4252.317 kb on - strand, within HP15_4017at 4252.400 kb on - strand, within HP15_4017at 4252.410 kb on - strand, within HP15_4017at 4252.425 kb on + strand, within HP15_4017at 4252.426 kb on - strand, within HP15_4017at 4252.548 kb on + strandat 4252.556 kb on - strandat 4252.556 kb on - strandat 4252.556 kb on - strandat 4252.591 kb on + strandat 4252.591 kb on - strandat 4252.599 kb on - strandat 4252.601 kb on + strandat 4252.609 kb on - strandat 4252.807 kb on - strand, within HP15_4018at 4252.879 kb on + strand, within HP15_4018at 4252.924 kb on - strand, within HP15_4018at 4252.967 kb on - strand, within HP15_4018at 4253.032 kb on - strand, within HP15_4018at 4253.049 kb on + strand, within HP15_4018at 4253.102 kb on - strand, within HP15_4018at 4253.112 kb on - strand, within HP15_4018at 4253.151 kb on + strand, within HP15_4018at 4253.358 kb on - strandat 4253.415 kb on - strandat 4253.430 kb on - strandat 4253.461 kb on - strandat 4253.512 kb on + strand, within HP15_4019at 4253.512 kb on + strand, within HP15_4019at 4253.520 kb on - strand, within HP15_4019

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine as (N)
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4,250,578 + HP15_4016 0.45 -0.6
4,250,581 - HP15_4016 0.46 +0.7
4,250,636 + HP15_4016 0.50 -0.3
4,250,701 - HP15_4016 0.55 -0.0
4,250,805 + HP15_4016 0.63 -0.7
4,250,825 - HP15_4016 0.64 -0.4
4,250,916 - HP15_4016 0.71 +1.3
4,251,020 - HP15_4016 0.79 +0.3
4,251,020 - HP15_4016 0.79 -0.9
4,251,101 - HP15_4016 0.85 -0.6
4,251,160 - HP15_4016 0.89 +1.1
4,251,166 + HP15_4016 0.90 +1.0
4,251,210 + -1.7
4,251,217 - -1.0
4,251,276 + +1.0
4,251,283 + +0.9
4,251,471 + -0.3
4,251,559 + +0.5
4,251,602 + HP15_4017 0.12 -0.3
4,251,631 + HP15_4017 0.15 -2.0
4,251,794 - HP15_4017 0.29 +0.9
4,251,818 - HP15_4017 0.31 +0.2
4,251,884 + HP15_4017 0.37 +1.7
4,251,949 + HP15_4017 0.43 +0.1
4,252,003 + HP15_4017 0.48 -0.2
4,252,003 + HP15_4017 0.48 +0.9
4,252,005 + HP15_4017 0.48 +1.4
4,252,011 - HP15_4017 0.49 -0.4
4,252,011 - HP15_4017 0.49 -0.5
4,252,011 - HP15_4017 0.49 -0.2
4,252,011 - HP15_4017 0.49 -0.3
4,252,011 - HP15_4017 0.49 +1.2
4,252,011 - HP15_4017 0.49 +0.0
4,252,011 - HP15_4017 0.49 -0.4
4,252,011 - HP15_4017 0.49 -1.7
4,252,021 + HP15_4017 0.50 +1.4
4,252,029 - HP15_4017 0.50 -0.7
4,252,233 + HP15_4017 0.69 +1.5
4,252,266 - HP15_4017 0.72 +0.8
4,252,317 - HP15_4017 0.76 +0.7
4,252,400 - HP15_4017 0.84 -0.3
4,252,410 - HP15_4017 0.85 +0.0
4,252,425 + HP15_4017 0.86 -0.3
4,252,426 - HP15_4017 0.86 +1.3
4,252,548 + +1.4
4,252,556 - -0.2
4,252,556 - -0.8
4,252,556 - -0.3
4,252,591 + +0.2
4,252,591 - +1.0
4,252,599 - +1.1
4,252,601 + +0.2
4,252,609 - -0.3
4,252,807 - HP15_4018 0.24 -1.0
4,252,879 + HP15_4018 0.36 +1.5
4,252,924 - HP15_4018 0.43 +0.0
4,252,967 - HP15_4018 0.51 -0.2
4,253,032 - HP15_4018 0.61 -0.7
4,253,049 + HP15_4018 0.64 -0.5
4,253,102 - HP15_4018 0.73 +0.5
4,253,112 - HP15_4018 0.75 -0.5
4,253,151 + HP15_4018 0.81 -0.3
4,253,358 - +1.2
4,253,415 - +0.3
4,253,430 - -0.5
4,253,461 - +1.4
4,253,512 + HP15_4019 0.14 -0.7
4,253,512 + HP15_4019 0.14 -0.2
4,253,520 - HP15_4019 0.14 -0.5

Or see this region's nucleotide sequence