Experiment: L-Phenylalanine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3707 and HP15_3708 are separated by 205 nucleotides HP15_3708 and HP15_3709 are separated by 89 nucleotides
HP15_3707: HP15_3707 - uncharacterized conserved protein UCP028137, membrane, at 3,913,723 to 3,914,487
_3707
HP15_3708: HP15_3708 - 4-aminobutyrate aminotransferase, at 3,914,693 to 3,915,970
_3708
HP15_3709: HP15_3709 - lipid A ABC transporter ATPase/inner membrane protein, at 3,916,060 to 3,917,732
_3709
Position (kb)
3914
3915
3916 Strain fitness (log2 ratio)
-1
0
1 at 3914.613 kb on + strand at 3914.622 kb on - strand at 3914.689 kb on - strand at 3914.780 kb on + strand at 3914.787 kb on + strand at 3914.795 kb on - strand at 3915.027 kb on - strand, within HP15_3708 at 3915.049 kb on + strand, within HP15_3708 at 3915.052 kb on - strand, within HP15_3708 at 3915.092 kb on - strand, within HP15_3708 at 3915.103 kb on + strand, within HP15_3708 at 3915.114 kb on + strand, within HP15_3708 at 3915.170 kb on - strand, within HP15_3708 at 3915.229 kb on - strand, within HP15_3708 at 3915.253 kb on - strand, within HP15_3708 at 3915.339 kb on + strand, within HP15_3708 at 3915.347 kb on - strand, within HP15_3708 at 3915.377 kb on + strand, within HP15_3708 at 3915.377 kb on + strand, within HP15_3708 at 3915.385 kb on - strand, within HP15_3708 at 3915.527 kb on - strand, within HP15_3708 at 3915.690 kb on + strand, within HP15_3708 at 3915.730 kb on + strand, within HP15_3708 at 3915.820 kb on + strand, within HP15_3708 at 3915.866 kb on + strand at 3915.871 kb on + strand at 3915.930 kb on + strand at 3915.986 kb on + strand at 3915.988 kb on + strand at 3916.093 kb on - strand at 3916.120 kb on + strand at 3916.164 kb on - strand at 3916.297 kb on - strand, within HP15_3709 at 3916.320 kb on - strand, within HP15_3709 at 3916.327 kb on + strand, within HP15_3709 at 3916.359 kb on + strand, within HP15_3709 at 3916.378 kb on + strand, within HP15_3709 at 3916.378 kb on + strand, within HP15_3709 at 3916.536 kb on - strand, within HP15_3709 at 3916.577 kb on + strand, within HP15_3709 at 3916.622 kb on - strand, within HP15_3709 at 3916.697 kb on + strand, within HP15_3709 at 3916.712 kb on + strand, within HP15_3709 at 3916.749 kb on + strand, within HP15_3709 at 3916.799 kb on - strand, within HP15_3709 at 3916.856 kb on + strand, within HP15_3709 at 3916.856 kb on + strand, within HP15_3709 at 3916.866 kb on + strand, within HP15_3709 at 3916.965 kb on - strand, within HP15_3709
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine as (N) remove 3,914,613 + +1.2 3,914,622 - +0.3 3,914,689 - +1.1 3,914,780 + -0.3 3,914,787 + +1.0 3,914,795 - +0.3 3,915,027 - HP15_3708 0.26 +0.5 3,915,049 + HP15_3708 0.28 -0.2 3,915,052 - HP15_3708 0.28 +0.7 3,915,092 - HP15_3708 0.31 +0.9 3,915,103 + HP15_3708 0.32 -0.1 3,915,114 + HP15_3708 0.33 -0.7 3,915,170 - HP15_3708 0.37 +0.2 3,915,229 - HP15_3708 0.42 -0.4 3,915,253 - HP15_3708 0.44 +1.1 3,915,339 + HP15_3708 0.51 +0.5 3,915,347 - HP15_3708 0.51 +0.3 3,915,377 + HP15_3708 0.54 +0.1 3,915,377 + HP15_3708 0.54 +1.1 3,915,385 - HP15_3708 0.54 -0.2 3,915,527 - HP15_3708 0.65 +0.8 3,915,690 + HP15_3708 0.78 +1.7 3,915,730 + HP15_3708 0.81 +1.3 3,915,820 + HP15_3708 0.88 -0.8 3,915,866 + -0.8 3,915,871 + +0.0 3,915,930 + -0.5 3,915,986 + +0.2 3,915,988 + -0.3 3,916,093 - -1.3 3,916,120 + -0.6 3,916,164 - +0.0 3,916,297 - HP15_3709 0.14 -0.7 3,916,320 - HP15_3709 0.16 +1.2 3,916,327 + HP15_3709 0.16 +1.7 3,916,359 + HP15_3709 0.18 +0.3 3,916,378 + HP15_3709 0.19 +0.1 3,916,378 + HP15_3709 0.19 +1.2 3,916,536 - HP15_3709 0.28 -1.0 3,916,577 + HP15_3709 0.31 -0.6 3,916,622 - HP15_3709 0.34 +0.1 3,916,697 + HP15_3709 0.38 -0.3 3,916,712 + HP15_3709 0.39 +0.8 3,916,749 + HP15_3709 0.41 -0.3 3,916,799 - HP15_3709 0.44 -0.3 3,916,856 + HP15_3709 0.48 +0.2 3,916,856 + HP15_3709 0.48 -0.1 3,916,866 + HP15_3709 0.48 +0.8 3,916,965 - HP15_3709 0.54 +0.7
Or see this region's nucleotide sequence