Experiment: L-Phenylalanine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3576 and HP15_3577 are separated by 19 nucleotides HP15_3577 and HP15_3578 are separated by 54 nucleotides HP15_3578 and HP15_3579 are separated by 12 nucleotides HP15_3579 and HP15_3580 are separated by 22 nucleotides
HP15_3576: HP15_3576 - methyl-accepting chemotaxis sensory transducer, at 3,766,563 to 3,768,224
_3576
HP15_3577: HP15_3577 - hypothetical protein, at 3,768,244 to 3,768,375
_3577
HP15_3578: HP15_3578 - acyl-coenzyme A dehydrogenase, at 3,768,430 to 3,770,937
_3578
HP15_3579: HP15_3579 - protein containing uncharacterized protein family UPF0066 domains, at 3,770,950 to 3,771,453
_3579
HP15_3580: HP15_3580 - molybdenum ABC transporter-like protein, periplasmic binding protein, at 3,771,476 to 3,772,267
_3580
Position (kb)
3768
3769
3770
3771 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3767.433 kb on + strand, within HP15_3576 at 3767.560 kb on - strand, within HP15_3576 at 3767.621 kb on + strand, within HP15_3576 at 3767.649 kb on - strand, within HP15_3576 at 3767.704 kb on - strand, within HP15_3576 at 3767.712 kb on - strand, within HP15_3576 at 3767.731 kb on - strand, within HP15_3576 at 3767.761 kb on + strand, within HP15_3576 at 3767.817 kb on + strand, within HP15_3576 at 3767.895 kb on + strand, within HP15_3576 at 3768.018 kb on + strand, within HP15_3576 at 3768.026 kb on - strand, within HP15_3576 at 3768.097 kb on - strand at 3768.179 kb on - strand at 3768.345 kb on + strand, within HP15_3577 at 3768.353 kb on - strand, within HP15_3577 at 3768.353 kb on - strand, within HP15_3577 at 3768.362 kb on + strand at 3768.392 kb on + strand at 3768.434 kb on + strand at 3768.567 kb on + strand at 3768.588 kb on - strand at 3768.605 kb on - strand at 3768.646 kb on + strand at 3768.646 kb on + strand at 3768.646 kb on + strand at 3768.646 kb on + strand at 3768.654 kb on - strand at 3768.679 kb on + strand at 3768.738 kb on - strand, within HP15_3578 at 3768.774 kb on - strand, within HP15_3578 at 3768.795 kb on - strand, within HP15_3578 at 3768.800 kb on - strand, within HP15_3578 at 3768.802 kb on + strand, within HP15_3578 at 3768.802 kb on + strand, within HP15_3578 at 3768.964 kb on - strand, within HP15_3578 at 3768.974 kb on - strand, within HP15_3578 at 3769.039 kb on + strand, within HP15_3578 at 3769.039 kb on + strand, within HP15_3578 at 3769.069 kb on + strand, within HP15_3578 at 3769.085 kb on - strand, within HP15_3578 at 3769.118 kb on - strand, within HP15_3578 at 3769.286 kb on - strand, within HP15_3578 at 3769.372 kb on - strand, within HP15_3578 at 3769.375 kb on - strand, within HP15_3578 at 3769.375 kb on - strand, within HP15_3578 at 3769.450 kb on + strand, within HP15_3578 at 3769.488 kb on - strand, within HP15_3578 at 3769.515 kb on + strand, within HP15_3578 at 3769.523 kb on - strand, within HP15_3578 at 3769.628 kb on + strand, within HP15_3578 at 3769.657 kb on - strand, within HP15_3578 at 3769.659 kb on + strand, within HP15_3578 at 3769.667 kb on - strand, within HP15_3578 at 3769.687 kb on - strand, within HP15_3578 at 3769.718 kb on - strand, within HP15_3578 at 3769.733 kb on + strand, within HP15_3578 at 3769.771 kb on - strand, within HP15_3578 at 3769.771 kb on - strand, within HP15_3578 at 3769.867 kb on - strand, within HP15_3578 at 3770.118 kb on + strand, within HP15_3578 at 3770.121 kb on - strand, within HP15_3578 at 3770.126 kb on - strand, within HP15_3578 at 3770.187 kb on + strand, within HP15_3578 at 3770.195 kb on - strand, within HP15_3578 at 3770.307 kb on - strand, within HP15_3578 at 3770.345 kb on - strand, within HP15_3578 at 3770.345 kb on - strand, within HP15_3578 at 3770.377 kb on + strand, within HP15_3578 at 3770.377 kb on + strand, within HP15_3578 at 3770.377 kb on + strand, within HP15_3578 at 3770.437 kb on + strand, within HP15_3578 at 3770.443 kb on + strand, within HP15_3578 at 3770.443 kb on + strand, within HP15_3578 at 3770.486 kb on + strand, within HP15_3578 at 3770.489 kb on - strand, within HP15_3578 at 3770.499 kb on - strand, within HP15_3578 at 3770.581 kb on + strand, within HP15_3578 at 3770.591 kb on - strand, within HP15_3578 at 3770.714 kb on + strand at 3770.717 kb on - strand at 3770.783 kb on + strand at 3770.838 kb on - strand at 3770.926 kb on + strand at 3771.050 kb on + strand, within HP15_3579 at 3771.078 kb on - strand, within HP15_3579 at 3771.085 kb on + strand, within HP15_3579 at 3771.141 kb on - strand, within HP15_3579 at 3771.171 kb on - strand, within HP15_3579 at 3771.181 kb on - strand, within HP15_3579 at 3771.249 kb on - strand, within HP15_3579 at 3771.265 kb on - strand, within HP15_3579 at 3771.267 kb on + strand, within HP15_3579 at 3771.367 kb on - strand, within HP15_3579 at 3771.498 kb on + strand at 3771.498 kb on + strand at 3771.503 kb on + strand at 3771.506 kb on - strand at 3771.506 kb on - strand at 3771.655 kb on - strand, within HP15_3580 at 3771.691 kb on - strand, within HP15_3580 at 3771.715 kb on + strand, within HP15_3580 at 3771.723 kb on - strand, within HP15_3580 at 3771.723 kb on - strand, within HP15_3580 at 3771.765 kb on + strand, within HP15_3580 at 3771.800 kb on - strand, within HP15_3580 at 3771.800 kb on - strand, within HP15_3580 at 3771.836 kb on - strand, within HP15_3580
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine as (N) remove 3,767,433 + HP15_3576 0.52 +3.9 3,767,560 - HP15_3576 0.60 +0.5 3,767,621 + HP15_3576 0.64 -0.3 3,767,649 - HP15_3576 0.65 -0.3 3,767,704 - HP15_3576 0.69 -0.2 3,767,712 - HP15_3576 0.69 +1.3 3,767,731 - HP15_3576 0.70 -1.1 3,767,761 + HP15_3576 0.72 -0.8 3,767,817 + HP15_3576 0.75 -0.3 3,767,895 + HP15_3576 0.80 -0.3 3,768,018 + HP15_3576 0.88 +0.4 3,768,026 - HP15_3576 0.88 +0.6 3,768,097 - +0.0 3,768,179 - +1.0 3,768,345 + HP15_3577 0.77 +1.5 3,768,353 - HP15_3577 0.83 -1.0 3,768,353 - HP15_3577 0.83 -0.1 3,768,362 + +0.3 3,768,392 + +0.5 3,768,434 + +0.5 3,768,567 + -0.2 3,768,588 - -1.0 3,768,605 - +0.2 3,768,646 + -1.3 3,768,646 + +1.0 3,768,646 + +0.6 3,768,646 + -0.1 3,768,654 - -0.3 3,768,679 + -2.6 3,768,738 - HP15_3578 0.12 +1.2 3,768,774 - HP15_3578 0.14 -0.4 3,768,795 - HP15_3578 0.15 +1.5 3,768,800 - HP15_3578 0.15 +0.2 3,768,802 + HP15_3578 0.15 +1.0 3,768,802 + HP15_3578 0.15 +0.0 3,768,964 - HP15_3578 0.21 +0.3 3,768,974 - HP15_3578 0.22 +1.1 3,769,039 + HP15_3578 0.24 +0.7 3,769,039 + HP15_3578 0.24 +2.3 3,769,069 + HP15_3578 0.25 -0.5 3,769,085 - HP15_3578 0.26 -0.1 3,769,118 - HP15_3578 0.27 -0.7 3,769,286 - HP15_3578 0.34 -0.4 3,769,372 - HP15_3578 0.38 -0.4 3,769,375 - HP15_3578 0.38 -0.5 3,769,375 - HP15_3578 0.38 +1.2 3,769,450 + HP15_3578 0.41 -0.7 3,769,488 - HP15_3578 0.42 -0.9 3,769,515 + HP15_3578 0.43 -0.0 3,769,523 - HP15_3578 0.44 -0.2 3,769,628 + HP15_3578 0.48 +1.6 3,769,657 - HP15_3578 0.49 -0.2 3,769,659 + HP15_3578 0.49 -0.9 3,769,667 - HP15_3578 0.49 -1.0 3,769,687 - HP15_3578 0.50 +0.7 3,769,718 - HP15_3578 0.51 +1.1 3,769,733 + HP15_3578 0.52 -0.3 3,769,771 - HP15_3578 0.53 -0.8 3,769,771 - HP15_3578 0.53 +0.8 3,769,867 - HP15_3578 0.57 +1.0 3,770,118 + HP15_3578 0.67 -0.2 3,770,121 - HP15_3578 0.67 -0.1 3,770,126 - HP15_3578 0.68 +1.0 3,770,187 + HP15_3578 0.70 +0.5 3,770,195 - HP15_3578 0.70 -0.5 3,770,307 - HP15_3578 0.75 -0.2 3,770,345 - HP15_3578 0.76 +1.3 3,770,345 - HP15_3578 0.76 +0.3 3,770,377 + HP15_3578 0.78 -0.6 3,770,377 + HP15_3578 0.78 +1.9 3,770,377 + HP15_3578 0.78 +0.2 3,770,437 + HP15_3578 0.80 +1.1 3,770,443 + HP15_3578 0.80 +0.9 3,770,443 + HP15_3578 0.80 -0.9 3,770,486 + HP15_3578 0.82 +1.2 3,770,489 - HP15_3578 0.82 -0.1 3,770,499 - HP15_3578 0.82 -0.7 3,770,581 + HP15_3578 0.86 -0.1 3,770,591 - HP15_3578 0.86 +0.4 3,770,714 + -0.4 3,770,717 - +0.2 3,770,783 + +0.1 3,770,838 - +0.9 3,770,926 + +1.2 3,771,050 + HP15_3579 0.20 -0.5 3,771,078 - HP15_3579 0.25 -0.3 3,771,085 + HP15_3579 0.27 +0.7 3,771,141 - HP15_3579 0.38 +0.4 3,771,171 - HP15_3579 0.44 +1.1 3,771,181 - HP15_3579 0.46 +0.1 3,771,249 - HP15_3579 0.59 -0.0 3,771,265 - HP15_3579 0.62 -0.1 3,771,267 + HP15_3579 0.63 -0.2 3,771,367 - HP15_3579 0.83 +0.3 3,771,498 + +0.5 3,771,498 + -0.4 3,771,503 + -0.4 3,771,506 - -0.5 3,771,506 - +1.5 3,771,655 - HP15_3580 0.23 -0.2 3,771,691 - HP15_3580 0.27 +1.1 3,771,715 + HP15_3580 0.30 +1.1 3,771,723 - HP15_3580 0.31 +0.2 3,771,723 - HP15_3580 0.31 +1.4 3,771,765 + HP15_3580 0.36 +1.5 3,771,800 - HP15_3580 0.41 +1.2 3,771,800 - HP15_3580 0.41 -0.1 3,771,836 - HP15_3580 0.45 -0.8
Or see this region's nucleotide sequence