Strain Fitness in Marinobacter adhaerens HP15 around HP15_3578

Experiment: L-Phenylalanine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3576 and HP15_3577 are separated by 19 nucleotidesHP15_3577 and HP15_3578 are separated by 54 nucleotidesHP15_3578 and HP15_3579 are separated by 12 nucleotidesHP15_3579 and HP15_3580 are separated by 22 nucleotides HP15_3576: HP15_3576 - methyl-accepting chemotaxis sensory transducer, at 3,766,563 to 3,768,224 _3576 HP15_3577: HP15_3577 - hypothetical protein, at 3,768,244 to 3,768,375 _3577 HP15_3578: HP15_3578 - acyl-coenzyme A dehydrogenase, at 3,768,430 to 3,770,937 _3578 HP15_3579: HP15_3579 - protein containing uncharacterized protein family UPF0066 domains, at 3,770,950 to 3,771,453 _3579 HP15_3580: HP15_3580 - molybdenum ABC transporter-like protein, periplasmic binding protein, at 3,771,476 to 3,772,267 _3580 Position (kb) 3768 3769 3770 3771Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3767.433 kb on + strand, within HP15_3576at 3767.560 kb on - strand, within HP15_3576at 3767.621 kb on + strand, within HP15_3576at 3767.649 kb on - strand, within HP15_3576at 3767.704 kb on - strand, within HP15_3576at 3767.712 kb on - strand, within HP15_3576at 3767.731 kb on - strand, within HP15_3576at 3767.761 kb on + strand, within HP15_3576at 3767.817 kb on + strand, within HP15_3576at 3767.895 kb on + strand, within HP15_3576at 3768.018 kb on + strand, within HP15_3576at 3768.026 kb on - strand, within HP15_3576at 3768.097 kb on - strandat 3768.179 kb on - strandat 3768.345 kb on + strand, within HP15_3577at 3768.353 kb on - strand, within HP15_3577at 3768.353 kb on - strand, within HP15_3577at 3768.362 kb on + strandat 3768.392 kb on + strandat 3768.434 kb on + strandat 3768.567 kb on + strandat 3768.588 kb on - strandat 3768.605 kb on - strandat 3768.646 kb on + strandat 3768.646 kb on + strandat 3768.646 kb on + strandat 3768.646 kb on + strandat 3768.654 kb on - strandat 3768.679 kb on + strandat 3768.738 kb on - strand, within HP15_3578at 3768.774 kb on - strand, within HP15_3578at 3768.795 kb on - strand, within HP15_3578at 3768.800 kb on - strand, within HP15_3578at 3768.802 kb on + strand, within HP15_3578at 3768.802 kb on + strand, within HP15_3578at 3768.964 kb on - strand, within HP15_3578at 3768.974 kb on - strand, within HP15_3578at 3769.039 kb on + strand, within HP15_3578at 3769.039 kb on + strand, within HP15_3578at 3769.069 kb on + strand, within HP15_3578at 3769.085 kb on - strand, within HP15_3578at 3769.118 kb on - strand, within HP15_3578at 3769.286 kb on - strand, within HP15_3578at 3769.372 kb on - strand, within HP15_3578at 3769.375 kb on - strand, within HP15_3578at 3769.375 kb on - strand, within HP15_3578at 3769.450 kb on + strand, within HP15_3578at 3769.488 kb on - strand, within HP15_3578at 3769.515 kb on + strand, within HP15_3578at 3769.523 kb on - strand, within HP15_3578at 3769.628 kb on + strand, within HP15_3578at 3769.657 kb on - strand, within HP15_3578at 3769.659 kb on + strand, within HP15_3578at 3769.667 kb on - strand, within HP15_3578at 3769.687 kb on - strand, within HP15_3578at 3769.718 kb on - strand, within HP15_3578at 3769.733 kb on + strand, within HP15_3578at 3769.771 kb on - strand, within HP15_3578at 3769.771 kb on - strand, within HP15_3578at 3769.867 kb on - strand, within HP15_3578at 3770.118 kb on + strand, within HP15_3578at 3770.121 kb on - strand, within HP15_3578at 3770.126 kb on - strand, within HP15_3578at 3770.187 kb on + strand, within HP15_3578at 3770.195 kb on - strand, within HP15_3578at 3770.307 kb on - strand, within HP15_3578at 3770.345 kb on - strand, within HP15_3578at 3770.345 kb on - strand, within HP15_3578at 3770.377 kb on + strand, within HP15_3578at 3770.377 kb on + strand, within HP15_3578at 3770.377 kb on + strand, within HP15_3578at 3770.437 kb on + strand, within HP15_3578at 3770.443 kb on + strand, within HP15_3578at 3770.443 kb on + strand, within HP15_3578at 3770.486 kb on + strand, within HP15_3578at 3770.489 kb on - strand, within HP15_3578at 3770.499 kb on - strand, within HP15_3578at 3770.581 kb on + strand, within HP15_3578at 3770.591 kb on - strand, within HP15_3578at 3770.714 kb on + strandat 3770.717 kb on - strandat 3770.783 kb on + strandat 3770.838 kb on - strandat 3770.926 kb on + strandat 3771.050 kb on + strand, within HP15_3579at 3771.078 kb on - strand, within HP15_3579at 3771.085 kb on + strand, within HP15_3579at 3771.141 kb on - strand, within HP15_3579at 3771.171 kb on - strand, within HP15_3579at 3771.181 kb on - strand, within HP15_3579at 3771.249 kb on - strand, within HP15_3579at 3771.265 kb on - strand, within HP15_3579at 3771.267 kb on + strand, within HP15_3579at 3771.367 kb on - strand, within HP15_3579at 3771.498 kb on + strandat 3771.498 kb on + strandat 3771.503 kb on + strandat 3771.506 kb on - strandat 3771.506 kb on - strandat 3771.655 kb on - strand, within HP15_3580at 3771.691 kb on - strand, within HP15_3580at 3771.715 kb on + strand, within HP15_3580at 3771.723 kb on - strand, within HP15_3580at 3771.723 kb on - strand, within HP15_3580at 3771.765 kb on + strand, within HP15_3580at 3771.800 kb on - strand, within HP15_3580at 3771.800 kb on - strand, within HP15_3580at 3771.836 kb on - strand, within HP15_3580

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine as (N)
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3,767,433 + HP15_3576 0.52 +3.9
3,767,560 - HP15_3576 0.60 +0.5
3,767,621 + HP15_3576 0.64 -0.3
3,767,649 - HP15_3576 0.65 -0.3
3,767,704 - HP15_3576 0.69 -0.2
3,767,712 - HP15_3576 0.69 +1.3
3,767,731 - HP15_3576 0.70 -1.1
3,767,761 + HP15_3576 0.72 -0.8
3,767,817 + HP15_3576 0.75 -0.3
3,767,895 + HP15_3576 0.80 -0.3
3,768,018 + HP15_3576 0.88 +0.4
3,768,026 - HP15_3576 0.88 +0.6
3,768,097 - +0.0
3,768,179 - +1.0
3,768,345 + HP15_3577 0.77 +1.5
3,768,353 - HP15_3577 0.83 -1.0
3,768,353 - HP15_3577 0.83 -0.1
3,768,362 + +0.3
3,768,392 + +0.5
3,768,434 + +0.5
3,768,567 + -0.2
3,768,588 - -1.0
3,768,605 - +0.2
3,768,646 + -1.3
3,768,646 + +1.0
3,768,646 + +0.6
3,768,646 + -0.1
3,768,654 - -0.3
3,768,679 + -2.6
3,768,738 - HP15_3578 0.12 +1.2
3,768,774 - HP15_3578 0.14 -0.4
3,768,795 - HP15_3578 0.15 +1.5
3,768,800 - HP15_3578 0.15 +0.2
3,768,802 + HP15_3578 0.15 +1.0
3,768,802 + HP15_3578 0.15 +0.0
3,768,964 - HP15_3578 0.21 +0.3
3,768,974 - HP15_3578 0.22 +1.1
3,769,039 + HP15_3578 0.24 +0.7
3,769,039 + HP15_3578 0.24 +2.3
3,769,069 + HP15_3578 0.25 -0.5
3,769,085 - HP15_3578 0.26 -0.1
3,769,118 - HP15_3578 0.27 -0.7
3,769,286 - HP15_3578 0.34 -0.4
3,769,372 - HP15_3578 0.38 -0.4
3,769,375 - HP15_3578 0.38 -0.5
3,769,375 - HP15_3578 0.38 +1.2
3,769,450 + HP15_3578 0.41 -0.7
3,769,488 - HP15_3578 0.42 -0.9
3,769,515 + HP15_3578 0.43 -0.0
3,769,523 - HP15_3578 0.44 -0.2
3,769,628 + HP15_3578 0.48 +1.6
3,769,657 - HP15_3578 0.49 -0.2
3,769,659 + HP15_3578 0.49 -0.9
3,769,667 - HP15_3578 0.49 -1.0
3,769,687 - HP15_3578 0.50 +0.7
3,769,718 - HP15_3578 0.51 +1.1
3,769,733 + HP15_3578 0.52 -0.3
3,769,771 - HP15_3578 0.53 -0.8
3,769,771 - HP15_3578 0.53 +0.8
3,769,867 - HP15_3578 0.57 +1.0
3,770,118 + HP15_3578 0.67 -0.2
3,770,121 - HP15_3578 0.67 -0.1
3,770,126 - HP15_3578 0.68 +1.0
3,770,187 + HP15_3578 0.70 +0.5
3,770,195 - HP15_3578 0.70 -0.5
3,770,307 - HP15_3578 0.75 -0.2
3,770,345 - HP15_3578 0.76 +1.3
3,770,345 - HP15_3578 0.76 +0.3
3,770,377 + HP15_3578 0.78 -0.6
3,770,377 + HP15_3578 0.78 +1.9
3,770,377 + HP15_3578 0.78 +0.2
3,770,437 + HP15_3578 0.80 +1.1
3,770,443 + HP15_3578 0.80 +0.9
3,770,443 + HP15_3578 0.80 -0.9
3,770,486 + HP15_3578 0.82 +1.2
3,770,489 - HP15_3578 0.82 -0.1
3,770,499 - HP15_3578 0.82 -0.7
3,770,581 + HP15_3578 0.86 -0.1
3,770,591 - HP15_3578 0.86 +0.4
3,770,714 + -0.4
3,770,717 - +0.2
3,770,783 + +0.1
3,770,838 - +0.9
3,770,926 + +1.2
3,771,050 + HP15_3579 0.20 -0.5
3,771,078 - HP15_3579 0.25 -0.3
3,771,085 + HP15_3579 0.27 +0.7
3,771,141 - HP15_3579 0.38 +0.4
3,771,171 - HP15_3579 0.44 +1.1
3,771,181 - HP15_3579 0.46 +0.1
3,771,249 - HP15_3579 0.59 -0.0
3,771,265 - HP15_3579 0.62 -0.1
3,771,267 + HP15_3579 0.63 -0.2
3,771,367 - HP15_3579 0.83 +0.3
3,771,498 + +0.5
3,771,498 + -0.4
3,771,503 + -0.4
3,771,506 - -0.5
3,771,506 - +1.5
3,771,655 - HP15_3580 0.23 -0.2
3,771,691 - HP15_3580 0.27 +1.1
3,771,715 + HP15_3580 0.30 +1.1
3,771,723 - HP15_3580 0.31 +0.2
3,771,723 - HP15_3580 0.31 +1.4
3,771,765 + HP15_3580 0.36 +1.5
3,771,800 - HP15_3580 0.41 +1.2
3,771,800 - HP15_3580 0.41 -0.1
3,771,836 - HP15_3580 0.45 -0.8

Or see this region's nucleotide sequence