Experiment: L-Phenylalanine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3469 and HP15_3470 overlap by 1 nucleotides HP15_3470 and HP15_3471 overlap by 4 nucleotides HP15_3471 and HP15_3472 are separated by 38 nucleotides
HP15_3469: HP15_3469 - protein containing DUF876, bacterial, at 3,656,883 to 3,658,217
_3469
HP15_3470: HP15_3470 - lipoprotein, at 3,658,217 to 3,658,750
_3470
HP15_3471: HP15_3471 - type VI secretion system, FHA domain-containing protein, at 3,658,747 to 3,660,045
_3471
HP15_3472: HP15_3472 - protein containing DUF1305, at 3,660,084 to 3,661,010
_3472
Position (kb)
3658
3659
3660
3661 Strain fitness (log2 ratio)
-1
0
1
2 at 3657.782 kb on + strand, within HP15_3469 at 3657.854 kb on - strand, within HP15_3469 at 3657.898 kb on - strand, within HP15_3469 at 3657.898 kb on - strand, within HP15_3469 at 3658.006 kb on + strand, within HP15_3469 at 3658.014 kb on - strand, within HP15_3469 at 3658.016 kb on + strand, within HP15_3469 at 3658.029 kb on + strand, within HP15_3469 at 3658.032 kb on - strand, within HP15_3469 at 3658.037 kb on - strand, within HP15_3469 at 3658.179 kb on + strand at 3658.327 kb on + strand, within HP15_3470 at 3658.327 kb on + strand, within HP15_3470 at 3658.327 kb on + strand, within HP15_3470 at 3658.408 kb on + strand, within HP15_3470 at 3658.595 kb on + strand, within HP15_3470 at 3658.595 kb on + strand, within HP15_3470 at 3658.595 kb on + strand, within HP15_3470 at 3658.603 kb on - strand, within HP15_3470 at 3658.608 kb on - strand, within HP15_3470 at 3658.688 kb on - strand, within HP15_3470 at 3658.866 kb on + strand at 3658.877 kb on + strand, within HP15_3471 at 3658.898 kb on + strand, within HP15_3471 at 3658.928 kb on + strand, within HP15_3471 at 3659.295 kb on - strand, within HP15_3471 at 3659.298 kb on + strand, within HP15_3471 at 3659.332 kb on - strand, within HP15_3471 at 3659.413 kb on - strand, within HP15_3471 at 3659.457 kb on - strand, within HP15_3471 at 3659.542 kb on + strand, within HP15_3471 at 3659.542 kb on + strand, within HP15_3471 at 3659.550 kb on + strand, within HP15_3471 at 3659.560 kb on - strand, within HP15_3471 at 3659.637 kb on + strand, within HP15_3471 at 3659.691 kb on - strand, within HP15_3471 at 3659.710 kb on - strand, within HP15_3471 at 3659.720 kb on + strand, within HP15_3471 at 3659.800 kb on + strand, within HP15_3471 at 3659.904 kb on - strand, within HP15_3471 at 3659.973 kb on + strand at 3659.975 kb on + strand at 3659.981 kb on - strand at 3660.117 kb on + strand at 3660.176 kb on + strand at 3660.248 kb on + strand, within HP15_3472 at 3660.259 kb on - strand, within HP15_3472 at 3660.372 kb on + strand, within HP15_3472 at 3660.387 kb on + strand, within HP15_3472 at 3660.395 kb on - strand, within HP15_3472 at 3660.397 kb on + strand, within HP15_3472 at 3660.523 kb on - strand, within HP15_3472 at 3660.527 kb on + strand, within HP15_3472 at 3660.555 kb on + strand, within HP15_3472 at 3660.558 kb on - strand, within HP15_3472 at 3660.558 kb on - strand, within HP15_3472 at 3660.558 kb on - strand, within HP15_3472 at 3660.563 kb on + strand, within HP15_3472 at 3660.581 kb on - strand, within HP15_3472 at 3660.614 kb on - strand, within HP15_3472 at 3660.618 kb on - strand, within HP15_3472 at 3660.635 kb on + strand, within HP15_3472 at 3660.645 kb on + strand, within HP15_3472 at 3660.785 kb on - strand, within HP15_3472 at 3660.785 kb on - strand, within HP15_3472 at 3660.785 kb on - strand, within HP15_3472 at 3660.812 kb on + strand, within HP15_3472 at 3660.812 kb on + strand, within HP15_3472 at 3660.917 kb on - strand, within HP15_3472
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine as (N) remove 3,657,782 + HP15_3469 0.67 +0.1 3,657,854 - HP15_3469 0.73 -0.5 3,657,898 - HP15_3469 0.76 +1.3 3,657,898 - HP15_3469 0.76 -0.6 3,658,006 + HP15_3469 0.84 -0.4 3,658,014 - HP15_3469 0.85 +0.6 3,658,016 + HP15_3469 0.85 +1.3 3,658,029 + HP15_3469 0.86 +1.1 3,658,032 - HP15_3469 0.86 +0.5 3,658,037 - HP15_3469 0.86 -0.2 3,658,179 + -0.7 3,658,327 + HP15_3470 0.21 +0.5 3,658,327 + HP15_3470 0.21 -0.4 3,658,327 + HP15_3470 0.21 +1.0 3,658,408 + HP15_3470 0.36 -0.3 3,658,595 + HP15_3470 0.71 -0.4 3,658,595 + HP15_3470 0.71 +1.2 3,658,595 + HP15_3470 0.71 +0.2 3,658,603 - HP15_3470 0.72 +0.7 3,658,608 - HP15_3470 0.73 +0.8 3,658,688 - HP15_3470 0.88 +0.1 3,658,866 + -1.0 3,658,877 + HP15_3471 0.10 +0.4 3,658,898 + HP15_3471 0.12 -0.5 3,658,928 + HP15_3471 0.14 -0.7 3,659,295 - HP15_3471 0.42 +1.3 3,659,298 + HP15_3471 0.42 +0.8 3,659,332 - HP15_3471 0.45 +1.1 3,659,413 - HP15_3471 0.51 -0.2 3,659,457 - HP15_3471 0.55 +1.2 3,659,542 + HP15_3471 0.61 +0.4 3,659,542 + HP15_3471 0.61 -0.6 3,659,550 + HP15_3471 0.62 +1.9 3,659,560 - HP15_3471 0.63 -0.3 3,659,637 + HP15_3471 0.69 +1.7 3,659,691 - HP15_3471 0.73 +0.9 3,659,710 - HP15_3471 0.74 +1.1 3,659,720 + HP15_3471 0.75 +0.0 3,659,800 + HP15_3471 0.81 +1.6 3,659,904 - HP15_3471 0.89 +1.1 3,659,973 + -0.1 3,659,975 + +1.6 3,659,981 - -1.3 3,660,117 + +0.9 3,660,176 + -0.5 3,660,248 + HP15_3472 0.18 -0.7 3,660,259 - HP15_3472 0.19 -0.2 3,660,372 + HP15_3472 0.31 -1.1 3,660,387 + HP15_3472 0.33 -0.4 3,660,395 - HP15_3472 0.34 -0.9 3,660,397 + HP15_3472 0.34 +0.9 3,660,523 - HP15_3472 0.47 +0.4 3,660,527 + HP15_3472 0.48 -0.8 3,660,555 + HP15_3472 0.51 -0.2 3,660,558 - HP15_3472 0.51 +0.8 3,660,558 - HP15_3472 0.51 +0.9 3,660,558 - HP15_3472 0.51 +1.2 3,660,563 + HP15_3472 0.52 -0.4 3,660,581 - HP15_3472 0.54 +1.1 3,660,614 - HP15_3472 0.57 -0.3 3,660,618 - HP15_3472 0.58 -0.2 3,660,635 + HP15_3472 0.59 +1.4 3,660,645 + HP15_3472 0.61 -0.3 3,660,785 - HP15_3472 0.76 +1.1 3,660,785 - HP15_3472 0.76 +0.3 3,660,785 - HP15_3472 0.76 -0.3 3,660,812 + HP15_3472 0.79 -1.1 3,660,812 + HP15_3472 0.79 -0.0 3,660,917 - HP15_3472 0.90 +0.3
Or see this region's nucleotide sequence