Strain Fitness in Marinobacter adhaerens HP15 around HP15_3471

Experiment: L-Phenylalanine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3469 and HP15_3470 overlap by 1 nucleotidesHP15_3470 and HP15_3471 overlap by 4 nucleotidesHP15_3471 and HP15_3472 are separated by 38 nucleotides HP15_3469: HP15_3469 - protein containing DUF876, bacterial, at 3,656,883 to 3,658,217 _3469 HP15_3470: HP15_3470 - lipoprotein, at 3,658,217 to 3,658,750 _3470 HP15_3471: HP15_3471 - type VI secretion system, FHA domain-containing protein, at 3,658,747 to 3,660,045 _3471 HP15_3472: HP15_3472 - protein containing DUF1305, at 3,660,084 to 3,661,010 _3472 Position (kb) 3658 3659 3660 3661Strain fitness (log2 ratio) -1 0 1 2at 3657.782 kb on + strand, within HP15_3469at 3657.854 kb on - strand, within HP15_3469at 3657.898 kb on - strand, within HP15_3469at 3657.898 kb on - strand, within HP15_3469at 3658.006 kb on + strand, within HP15_3469at 3658.014 kb on - strand, within HP15_3469at 3658.016 kb on + strand, within HP15_3469at 3658.029 kb on + strand, within HP15_3469at 3658.032 kb on - strand, within HP15_3469at 3658.037 kb on - strand, within HP15_3469at 3658.179 kb on + strandat 3658.327 kb on + strand, within HP15_3470at 3658.327 kb on + strand, within HP15_3470at 3658.327 kb on + strand, within HP15_3470at 3658.408 kb on + strand, within HP15_3470at 3658.595 kb on + strand, within HP15_3470at 3658.595 kb on + strand, within HP15_3470at 3658.595 kb on + strand, within HP15_3470at 3658.603 kb on - strand, within HP15_3470at 3658.608 kb on - strand, within HP15_3470at 3658.688 kb on - strand, within HP15_3470at 3658.866 kb on + strandat 3658.877 kb on + strand, within HP15_3471at 3658.898 kb on + strand, within HP15_3471at 3658.928 kb on + strand, within HP15_3471at 3659.295 kb on - strand, within HP15_3471at 3659.298 kb on + strand, within HP15_3471at 3659.332 kb on - strand, within HP15_3471at 3659.413 kb on - strand, within HP15_3471at 3659.457 kb on - strand, within HP15_3471at 3659.542 kb on + strand, within HP15_3471at 3659.542 kb on + strand, within HP15_3471at 3659.550 kb on + strand, within HP15_3471at 3659.560 kb on - strand, within HP15_3471at 3659.637 kb on + strand, within HP15_3471at 3659.691 kb on - strand, within HP15_3471at 3659.710 kb on - strand, within HP15_3471at 3659.720 kb on + strand, within HP15_3471at 3659.800 kb on + strand, within HP15_3471at 3659.904 kb on - strand, within HP15_3471at 3659.973 kb on + strandat 3659.975 kb on + strandat 3659.981 kb on - strandat 3660.117 kb on + strandat 3660.176 kb on + strandat 3660.248 kb on + strand, within HP15_3472at 3660.259 kb on - strand, within HP15_3472at 3660.372 kb on + strand, within HP15_3472at 3660.387 kb on + strand, within HP15_3472at 3660.395 kb on - strand, within HP15_3472at 3660.397 kb on + strand, within HP15_3472at 3660.523 kb on - strand, within HP15_3472at 3660.527 kb on + strand, within HP15_3472at 3660.555 kb on + strand, within HP15_3472at 3660.558 kb on - strand, within HP15_3472at 3660.558 kb on - strand, within HP15_3472at 3660.558 kb on - strand, within HP15_3472at 3660.563 kb on + strand, within HP15_3472at 3660.581 kb on - strand, within HP15_3472at 3660.614 kb on - strand, within HP15_3472at 3660.618 kb on - strand, within HP15_3472at 3660.635 kb on + strand, within HP15_3472at 3660.645 kb on + strand, within HP15_3472at 3660.785 kb on - strand, within HP15_3472at 3660.785 kb on - strand, within HP15_3472at 3660.785 kb on - strand, within HP15_3472at 3660.812 kb on + strand, within HP15_3472at 3660.812 kb on + strand, within HP15_3472at 3660.917 kb on - strand, within HP15_3472

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine as (N)
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3,657,782 + HP15_3469 0.67 +0.1
3,657,854 - HP15_3469 0.73 -0.5
3,657,898 - HP15_3469 0.76 +1.3
3,657,898 - HP15_3469 0.76 -0.6
3,658,006 + HP15_3469 0.84 -0.4
3,658,014 - HP15_3469 0.85 +0.6
3,658,016 + HP15_3469 0.85 +1.3
3,658,029 + HP15_3469 0.86 +1.1
3,658,032 - HP15_3469 0.86 +0.5
3,658,037 - HP15_3469 0.86 -0.2
3,658,179 + -0.7
3,658,327 + HP15_3470 0.21 +0.5
3,658,327 + HP15_3470 0.21 -0.4
3,658,327 + HP15_3470 0.21 +1.0
3,658,408 + HP15_3470 0.36 -0.3
3,658,595 + HP15_3470 0.71 -0.4
3,658,595 + HP15_3470 0.71 +1.2
3,658,595 + HP15_3470 0.71 +0.2
3,658,603 - HP15_3470 0.72 +0.7
3,658,608 - HP15_3470 0.73 +0.8
3,658,688 - HP15_3470 0.88 +0.1
3,658,866 + -1.0
3,658,877 + HP15_3471 0.10 +0.4
3,658,898 + HP15_3471 0.12 -0.5
3,658,928 + HP15_3471 0.14 -0.7
3,659,295 - HP15_3471 0.42 +1.3
3,659,298 + HP15_3471 0.42 +0.8
3,659,332 - HP15_3471 0.45 +1.1
3,659,413 - HP15_3471 0.51 -0.2
3,659,457 - HP15_3471 0.55 +1.2
3,659,542 + HP15_3471 0.61 +0.4
3,659,542 + HP15_3471 0.61 -0.6
3,659,550 + HP15_3471 0.62 +1.9
3,659,560 - HP15_3471 0.63 -0.3
3,659,637 + HP15_3471 0.69 +1.7
3,659,691 - HP15_3471 0.73 +0.9
3,659,710 - HP15_3471 0.74 +1.1
3,659,720 + HP15_3471 0.75 +0.0
3,659,800 + HP15_3471 0.81 +1.6
3,659,904 - HP15_3471 0.89 +1.1
3,659,973 + -0.1
3,659,975 + +1.6
3,659,981 - -1.3
3,660,117 + +0.9
3,660,176 + -0.5
3,660,248 + HP15_3472 0.18 -0.7
3,660,259 - HP15_3472 0.19 -0.2
3,660,372 + HP15_3472 0.31 -1.1
3,660,387 + HP15_3472 0.33 -0.4
3,660,395 - HP15_3472 0.34 -0.9
3,660,397 + HP15_3472 0.34 +0.9
3,660,523 - HP15_3472 0.47 +0.4
3,660,527 + HP15_3472 0.48 -0.8
3,660,555 + HP15_3472 0.51 -0.2
3,660,558 - HP15_3472 0.51 +0.8
3,660,558 - HP15_3472 0.51 +0.9
3,660,558 - HP15_3472 0.51 +1.2
3,660,563 + HP15_3472 0.52 -0.4
3,660,581 - HP15_3472 0.54 +1.1
3,660,614 - HP15_3472 0.57 -0.3
3,660,618 - HP15_3472 0.58 -0.2
3,660,635 + HP15_3472 0.59 +1.4
3,660,645 + HP15_3472 0.61 -0.3
3,660,785 - HP15_3472 0.76 +1.1
3,660,785 - HP15_3472 0.76 +0.3
3,660,785 - HP15_3472 0.76 -0.3
3,660,812 + HP15_3472 0.79 -1.1
3,660,812 + HP15_3472 0.79 -0.0
3,660,917 - HP15_3472 0.90 +0.3

Or see this region's nucleotide sequence