Strain Fitness in Marinobacter adhaerens HP15 around HP15_3046

Experiment: L-Phenylalanine as (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_3045 and HP15_3046 are separated by 10 nucleotidesHP15_3046 and HP15_3047 are separated by 660 nucleotides HP15_3045: HP15_3045 - pyruvate dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase, at 3,193,366 to 3,195,030 _3045 HP15_3046: HP15_3046 - pyruvate dehydrogenase subunit E1, at 3,195,041 to 3,197,704 _3046 HP15_3047: HP15_3047 - lysine 2,3-aminomutase-like protein, at 3,198,365 to 3,199,729 _3047 Position (kb) 3195 3196 3197 3198Strain fitness (log2 ratio) -2 -1 0 1at 3194.923 kb on + strandat 3195.266 kb on + strandat 3195.664 kb on - strand, within HP15_3046at 3196.199 kb on - strand, within HP15_3046at 3197.804 kb on - strandat 3197.804 kb on - strandat 3198.079 kb on - strandat 3198.382 kb on - strandat 3198.423 kb on + strandat 3198.438 kb on - strandat 3198.438 kb on - strandat 3198.641 kb on - strand, within HP15_3047

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine as (N)
remove
3,194,923 + -2.7
3,195,266 + -2.6
3,195,664 - HP15_3046 0.23 -0.3
3,196,199 - HP15_3046 0.43 -2.0
3,197,804 - +0.4
3,197,804 - +1.2
3,198,079 - +0.1
3,198,382 - +0.2
3,198,423 + +0.4
3,198,438 - +0.6
3,198,438 - -0.3
3,198,641 - HP15_3047 0.20 +0.0

Or see this region's nucleotide sequence