Experiment: L-Phenylalanine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_269 and HP15_270 overlap by 4 nucleotides HP15_270 and HP15_271 are separated by 299 nucleotides HP15_271 and HP15_272 are separated by 6 nucleotides
HP15_269: HP15_269 - anti-sigma factor ChrR, at 260,467 to 261,105
_269
HP15_270: HP15_270 - RNA polymerase, sigma-24 subunit, ECF subfamily, at 261,102 to 261,641
_270
HP15_271: HP15_271 - transcriptional regulator, AraC family protein, at 261,941 to 262,978
_271
HP15_272: HP15_272 - biosynthetic arginine decarboxylase, at 262,985 to 264,895
_272
Position (kb) 261
262
263 Strain fitness (log2 ratio) -1
0
1
2 at 261.169 kb on + strand, within HP15_270 at 261.179 kb on - strand, within HP15_270 at 261.186 kb on - strand, within HP15_270 at 261.306 kb on + strand, within HP15_270 at 261.377 kb on + strand, within HP15_270 at 261.468 kb on - strand, within HP15_270 at 261.564 kb on - strand, within HP15_270 at 261.620 kb on - strand at 261.620 kb on - strand at 261.708 kb on + strand at 261.784 kb on - strand at 261.887 kb on + strand at 261.892 kb on - strand at 261.896 kb on + strand at 261.896 kb on + strand at 261.909 kb on - strand at 262.028 kb on - strand at 262.111 kb on + strand, within HP15_271 at 262.111 kb on + strand, within HP15_271 at 262.118 kb on + strand, within HP15_271 at 262.118 kb on + strand, within HP15_271 at 262.118 kb on + strand, within HP15_271 at 262.119 kb on - strand, within HP15_271 at 262.119 kb on - strand, within HP15_271 at 262.119 kb on - strand, within HP15_271 at 262.119 kb on - strand, within HP15_271 at 262.152 kb on - strand, within HP15_271 at 262.189 kb on - strand, within HP15_271 at 262.261 kb on + strand, within HP15_271 at 262.269 kb on - strand, within HP15_271 at 262.353 kb on + strand, within HP15_271 at 262.361 kb on - strand, within HP15_271 at 262.361 kb on - strand, within HP15_271 at 262.385 kb on - strand, within HP15_271 at 262.528 kb on - strand, within HP15_271 at 262.572 kb on + strand, within HP15_271 at 262.619 kb on - strand, within HP15_271 at 262.684 kb on + strand, within HP15_271 at 262.692 kb on - strand, within HP15_271 at 262.777 kb on - strand, within HP15_271 at 262.802 kb on + strand, within HP15_271 at 262.830 kb on + strand, within HP15_271 at 262.838 kb on - strand, within HP15_271 at 262.848 kb on + strand, within HP15_271 at 262.891 kb on - strand at 262.893 kb on - strand at 262.893 kb on - strand at 263.034 kb on - strand at 263.134 kb on - strand at 263.323 kb on - strand, within HP15_272 at 263.323 kb on - strand, within HP15_272 at 263.447 kb on + strand, within HP15_272 at 263.452 kb on + strand, within HP15_272 at 263.627 kb on + strand, within HP15_272 at 263.635 kb on - strand, within HP15_272 at 263.637 kb on - strand, within HP15_272 at 263.641 kb on - strand, within HP15_272 at 263.692 kb on - strand, within HP15_272 at 263.862 kb on + strand, within HP15_272 at 263.890 kb on + strand, within HP15_272 at 263.967 kb on + strand, within HP15_272
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine as (N) remove 261,169 + HP15_270 0.12 +0.3 261,179 - HP15_270 0.14 +1.0 261,186 - HP15_270 0.16 +0.1 261,306 + HP15_270 0.38 +1.8 261,377 + HP15_270 0.51 -0.9 261,468 - HP15_270 0.68 +1.5 261,564 - HP15_270 0.86 +1.3 261,620 - +0.8 261,620 - +1.4 261,708 + -1.5 261,784 - +0.8 261,887 + -0.4 261,892 - +1.3 261,896 + -0.4 261,896 + -1.1 261,909 - -0.4 262,028 - +0.2 262,111 + HP15_271 0.16 +0.8 262,111 + HP15_271 0.16 +0.8 262,118 + HP15_271 0.17 -0.1 262,118 + HP15_271 0.17 -0.4 262,118 + HP15_271 0.17 +1.3 262,119 - HP15_271 0.17 +1.1 262,119 - HP15_271 0.17 +0.4 262,119 - HP15_271 0.17 +1.4 262,119 - HP15_271 0.17 +1.3 262,152 - HP15_271 0.20 -0.1 262,189 - HP15_271 0.24 -0.2 262,261 + HP15_271 0.31 +0.5 262,269 - HP15_271 0.32 +0.5 262,353 + HP15_271 0.40 +1.0 262,361 - HP15_271 0.40 -0.1 262,361 - HP15_271 0.40 +0.1 262,385 - HP15_271 0.43 +2.3 262,528 - HP15_271 0.57 -0.5 262,572 + HP15_271 0.61 +0.4 262,619 - HP15_271 0.65 +0.5 262,684 + HP15_271 0.72 +1.2 262,692 - HP15_271 0.72 -0.9 262,777 - HP15_271 0.81 +1.9 262,802 + HP15_271 0.83 -0.4 262,830 + HP15_271 0.86 -0.4 262,838 - HP15_271 0.86 +1.1 262,848 + HP15_271 0.87 +0.1 262,891 - +0.4 262,893 - +0.6 262,893 - -0.5 263,034 - +1.8 263,134 - -0.6 263,323 - HP15_272 0.18 +1.1 263,323 - HP15_272 0.18 -0.9 263,447 + HP15_272 0.24 -0.2 263,452 + HP15_272 0.24 +0.1 263,627 + HP15_272 0.34 +1.6 263,635 - HP15_272 0.34 +1.0 263,637 - HP15_272 0.34 +0.3 263,641 - HP15_272 0.34 -1.5 263,692 - HP15_272 0.37 -0.6 263,862 + HP15_272 0.46 +1.6 263,890 + HP15_272 0.47 -0.5 263,967 + HP15_272 0.51 -0.1
Or see this region's nucleotide sequence