Experiment: L-Phenylalanine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2163 and HP15_2164 overlap by 1 nucleotides HP15_2164 and HP15_2165 are separated by 334 nucleotides
HP15_2163: HP15_2163 - sugar ABC transporter, ATP-binding protein, at 2,269,438 to 2,270,538
_2163
HP15_2164: HP15_2164 - ATP-binding protein of sugar ABC transporter, at 2,270,538 to 2,271,632
_2164
HP15_2165: HP15_2165 - sigma-54 dependent transcriptional regulator, at 2,271,967 to 2,273,847
_2165
Position (kb)
2270
2271
2272 Strain fitness (log2 ratio)
-1
0
1
2 at 2269.573 kb on - strand, within HP15_2163 at 2269.612 kb on + strand, within HP15_2163 at 2269.846 kb on - strand, within HP15_2163 at 2269.856 kb on - strand, within HP15_2163 at 2269.902 kb on + strand, within HP15_2163 at 2269.928 kb on + strand, within HP15_2163 at 2269.929 kb on - strand, within HP15_2163 at 2270.012 kb on - strand, within HP15_2163 at 2270.041 kb on - strand, within HP15_2163 at 2270.064 kb on + strand, within HP15_2163 at 2270.366 kb on - strand, within HP15_2163 at 2270.404 kb on + strand, within HP15_2163 at 2270.412 kb on - strand, within HP15_2163 at 2270.490 kb on + strand at 2270.649 kb on + strand, within HP15_2164 at 2270.722 kb on + strand, within HP15_2164 at 2270.736 kb on + strand, within HP15_2164 at 2270.955 kb on + strand, within HP15_2164 at 2271.072 kb on + strand, within HP15_2164 at 2271.074 kb on + strand, within HP15_2164 at 2271.082 kb on - strand, within HP15_2164 at 2271.084 kb on - strand, within HP15_2164 at 2271.115 kb on + strand, within HP15_2164 at 2271.201 kb on + strand, within HP15_2164 at 2271.209 kb on - strand, within HP15_2164 at 2271.216 kb on - strand, within HP15_2164 at 2271.218 kb on + strand, within HP15_2164 at 2271.234 kb on - strand, within HP15_2164 at 2271.260 kb on - strand, within HP15_2164 at 2271.362 kb on + strand, within HP15_2164 at 2271.484 kb on - strand, within HP15_2164 at 2271.484 kb on - strand, within HP15_2164 at 2271.521 kb on + strand, within HP15_2164 at 2271.620 kb on + strand at 2271.628 kb on - strand at 2271.674 kb on + strand at 2271.896 kb on + strand at 2272.093 kb on - strand at 2272.127 kb on - strand at 2272.175 kb on + strand, within HP15_2165 at 2272.243 kb on + strand, within HP15_2165 at 2272.251 kb on - strand, within HP15_2165 at 2272.389 kb on + strand, within HP15_2165 at 2272.468 kb on - strand, within HP15_2165 at 2272.506 kb on + strand, within HP15_2165 at 2272.514 kb on - strand, within HP15_2165
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine as (N) remove 2,269,573 - HP15_2163 0.12 +1.4 2,269,612 + HP15_2163 0.16 -0.5 2,269,846 - HP15_2163 0.37 +1.5 2,269,856 - HP15_2163 0.38 -0.3 2,269,902 + HP15_2163 0.42 -0.4 2,269,928 + HP15_2163 0.45 -0.0 2,269,929 - HP15_2163 0.45 +0.0 2,270,012 - HP15_2163 0.52 +1.7 2,270,041 - HP15_2163 0.55 -0.3 2,270,064 + HP15_2163 0.57 -0.2 2,270,366 - HP15_2163 0.84 +0.9 2,270,404 + HP15_2163 0.88 +0.4 2,270,412 - HP15_2163 0.88 +0.5 2,270,490 + -0.6 2,270,649 + HP15_2164 0.10 +0.8 2,270,722 + HP15_2164 0.17 -0.4 2,270,736 + HP15_2164 0.18 -0.7 2,270,955 + HP15_2164 0.38 +0.3 2,271,072 + HP15_2164 0.49 -0.1 2,271,074 + HP15_2164 0.49 +0.4 2,271,082 - HP15_2164 0.50 +2.3 2,271,084 - HP15_2164 0.50 +1.2 2,271,115 + HP15_2164 0.53 +1.0 2,271,201 + HP15_2164 0.61 +0.4 2,271,209 - HP15_2164 0.61 +1.1 2,271,216 - HP15_2164 0.62 +0.6 2,271,218 + HP15_2164 0.62 +0.3 2,271,234 - HP15_2164 0.64 +0.9 2,271,260 - HP15_2164 0.66 -0.4 2,271,362 + HP15_2164 0.75 -1.5 2,271,484 - HP15_2164 0.86 +1.3 2,271,484 - HP15_2164 0.86 +0.6 2,271,521 + HP15_2164 0.90 +0.2 2,271,620 + -1.0 2,271,628 - -0.0 2,271,674 + -0.2 2,271,896 + +1.2 2,272,093 - +1.2 2,272,127 - -0.7 2,272,175 + HP15_2165 0.11 -1.1 2,272,243 + HP15_2165 0.15 -1.1 2,272,251 - HP15_2165 0.15 -0.5 2,272,389 + HP15_2165 0.22 +0.9 2,272,468 - HP15_2165 0.27 +1.4 2,272,506 + HP15_2165 0.29 -0.4 2,272,514 - HP15_2165 0.29 +0.7
Or see this region's nucleotide sequence