Experiment: L-Phenylalanine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1860 and HP15_1861 are separated by 143 nucleotides HP15_1861 and HP15_1862 are separated by 12 nucleotides HP15_1862 and HP15_1863 are separated by 150 nucleotides
HP15_1860: HP15_1860 - VacJ family lipoprotein, at 1,963,370 to 1,964,161
_1860
HP15_1861: HP15_1861 - thioesterase superfamily protein, at 1,964,305 to 1,964,655
_1861
HP15_1862: HP15_1862 - 3-oxoacyl-(acyl carrier protein) synthase III, at 1,964,668 to 1,965,789
_1862
HP15_1863: HP15_1863 - RNA helicase, ATP-dependent DEAH box, HrpA type, at 1,965,940 to 1,969,875
_1863
Position (kb)
1964
1965
1966 Strain fitness (log2 ratio)
-1
0
1
2 at 1963.749 kb on - strand, within HP15_1860 at 1963.777 kb on + strand, within HP15_1860 at 1963.777 kb on + strand, within HP15_1860 at 1963.784 kb on + strand, within HP15_1860 at 1963.867 kb on + strand, within HP15_1860 at 1964.035 kb on - strand, within HP15_1860 at 1964.249 kb on + strand at 1964.274 kb on + strand at 1964.284 kb on - strand at 1964.343 kb on - strand, within HP15_1861 at 1964.381 kb on + strand, within HP15_1861 at 1964.425 kb on + strand, within HP15_1861 at 1964.503 kb on + strand, within HP15_1861 at 1964.808 kb on + strand, within HP15_1862 at 1964.855 kb on + strand, within HP15_1862 at 1964.856 kb on - strand, within HP15_1862 at 1964.882 kb on - strand, within HP15_1862 at 1965.128 kb on + strand, within HP15_1862 at 1965.311 kb on - strand, within HP15_1862 at 1965.311 kb on - strand, within HP15_1862 at 1965.416 kb on - strand, within HP15_1862 at 1965.506 kb on + strand, within HP15_1862 at 1965.683 kb on + strand at 1965.691 kb on - strand at 1965.701 kb on - strand at 1965.713 kb on + strand at 1965.762 kb on - strand at 1965.808 kb on - strand at 1966.079 kb on - strand at 1966.079 kb on - strand at 1966.128 kb on + strand at 1966.136 kb on - strand at 1966.136 kb on - strand at 1966.208 kb on - strand at 1966.367 kb on + strand, within HP15_1863 at 1966.388 kb on + strand, within HP15_1863 at 1966.438 kb on + strand, within HP15_1863 at 1966.454 kb on - strand, within HP15_1863 at 1966.568 kb on - strand, within HP15_1863 at 1966.673 kb on - strand, within HP15_1863
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine as (N) remove 1,963,749 - HP15_1860 0.48 -0.4 1,963,777 + HP15_1860 0.51 -0.6 1,963,777 + HP15_1860 0.51 -1.2 1,963,784 + HP15_1860 0.52 -0.7 1,963,867 + HP15_1860 0.63 +0.7 1,964,035 - HP15_1860 0.84 +0.3 1,964,249 + -0.1 1,964,274 + -0.0 1,964,284 - +1.1 1,964,343 - HP15_1861 0.11 -0.8 1,964,381 + HP15_1861 0.22 +0.1 1,964,425 + HP15_1861 0.34 +0.8 1,964,503 + HP15_1861 0.56 +0.9 1,964,808 + HP15_1862 0.12 +0.0 1,964,855 + HP15_1862 0.17 +1.1 1,964,856 - HP15_1862 0.17 -0.3 1,964,882 - HP15_1862 0.19 -0.8 1,965,128 + HP15_1862 0.41 +1.3 1,965,311 - HP15_1862 0.57 +1.2 1,965,311 - HP15_1862 0.57 -0.3 1,965,416 - HP15_1862 0.67 +1.2 1,965,506 + HP15_1862 0.75 +0.7 1,965,683 + -0.5 1,965,691 - +0.4 1,965,701 - -0.3 1,965,713 + -0.4 1,965,762 - -0.2 1,965,808 - +2.0 1,966,079 - +1.4 1,966,079 - -0.2 1,966,128 + +0.2 1,966,136 - +2.3 1,966,136 - +0.9 1,966,208 - -0.8 1,966,367 + HP15_1863 0.11 -1.1 1,966,388 + HP15_1863 0.11 -0.4 1,966,438 + HP15_1863 0.13 -0.8 1,966,454 - HP15_1863 0.13 +0.2 1,966,568 - HP15_1863 0.16 -1.5 1,966,673 - HP15_1863 0.19 -0.4
Or see this region's nucleotide sequence