Experiment: L-Phenylalanine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1399 and HP15_1400 are separated by 30 nucleotides HP15_1400 and HP15_1401 are separated by 78 nucleotides
HP15_1399: HP15_1399 - metal-dependent hydrolase-like protein, at 1,475,369 to 1,476,334
_1399
HP15_1400: HP15_1400 - fructose-bisphosphate aldolase B, at 1,476,365 to 1,477,429
_1400
HP15_1401: HP15_1401 - shikimate/quinate 5-dehydrogenase, at 1,477,508 to 1,479,619
_1401
Position (kb)
1476
1477
1478 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1475.453 kb on + strand at 1475.461 kb on - strand at 1475.461 kb on - strand at 1475.499 kb on - strand, within HP15_1399 at 1475.503 kb on - strand, within HP15_1399 at 1475.667 kb on + strand, within HP15_1399 at 1475.675 kb on - strand, within HP15_1399 at 1475.835 kb on - strand, within HP15_1399 at 1475.937 kb on - strand, within HP15_1399 at 1475.969 kb on + strand, within HP15_1399 at 1475.999 kb on + strand, within HP15_1399 at 1476.212 kb on + strand, within HP15_1399 at 1476.340 kb on + strand at 1476.438 kb on + strand at 1476.525 kb on + strand, within HP15_1400 at 1476.526 kb on + strand, within HP15_1400 at 1476.533 kb on - strand, within HP15_1400 at 1476.791 kb on + strand, within HP15_1400 at 1476.814 kb on - strand, within HP15_1400 at 1476.928 kb on - strand, within HP15_1400 at 1477.012 kb on + strand, within HP15_1400 at 1477.034 kb on + strand, within HP15_1400 at 1477.096 kb on + strand, within HP15_1400 at 1477.216 kb on + strand, within HP15_1400 at 1477.238 kb on + strand, within HP15_1400 at 1477.269 kb on + strand, within HP15_1400 at 1477.270 kb on - strand, within HP15_1400 at 1477.392 kb on - strand at 1477.448 kb on - strand at 1477.557 kb on + strand at 1477.577 kb on - strand at 1477.670 kb on + strand at 1477.670 kb on + strand at 1477.670 kb on + strand at 1477.706 kb on + strand at 1478.103 kb on - strand, within HP15_1401 at 1478.103 kb on - strand, within HP15_1401 at 1478.105 kb on + strand, within HP15_1401 at 1478.164 kb on - strand, within HP15_1401 at 1478.203 kb on - strand, within HP15_1401 at 1478.261 kb on + strand, within HP15_1401 at 1478.279 kb on - strand, within HP15_1401 at 1478.400 kb on - strand, within HP15_1401 at 1478.417 kb on - strand, within HP15_1401 at 1478.420 kb on + strand, within HP15_1401
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine as (N) remove 1,475,453 + +2.2 1,475,461 - -1.8 1,475,461 - -0.3 1,475,499 - HP15_1399 0.13 -0.7 1,475,503 - HP15_1399 0.14 -0.1 1,475,667 + HP15_1399 0.31 -0.1 1,475,675 - HP15_1399 0.32 -1.2 1,475,835 - HP15_1399 0.48 -1.6 1,475,937 - HP15_1399 0.59 -0.3 1,475,969 + HP15_1399 0.62 -0.5 1,475,999 + HP15_1399 0.65 -0.6 1,476,212 + HP15_1399 0.87 -0.2 1,476,340 + +0.4 1,476,438 + +0.1 1,476,525 + HP15_1400 0.15 -0.5 1,476,526 + HP15_1400 0.15 -0.6 1,476,533 - HP15_1400 0.16 -0.6 1,476,791 + HP15_1400 0.40 +0.5 1,476,814 - HP15_1400 0.42 -0.3 1,476,928 - HP15_1400 0.53 -0.3 1,477,012 + HP15_1400 0.61 -0.2 1,477,034 + HP15_1400 0.63 +1.2 1,477,096 + HP15_1400 0.69 +0.2 1,477,216 + HP15_1400 0.80 +0.0 1,477,238 + HP15_1400 0.82 -0.1 1,477,269 + HP15_1400 0.85 -0.2 1,477,270 - HP15_1400 0.85 +1.7 1,477,392 - -0.4 1,477,448 - +0.2 1,477,557 + -0.3 1,477,577 - +0.8 1,477,670 + -0.4 1,477,670 + -0.6 1,477,670 + +0.3 1,477,706 + -0.1 1,478,103 - HP15_1401 0.28 -0.0 1,478,103 - HP15_1401 0.28 -0.8 1,478,105 + HP15_1401 0.28 -1.4 1,478,164 - HP15_1401 0.31 -0.3 1,478,203 - HP15_1401 0.33 +0.6 1,478,261 + HP15_1401 0.36 +1.1 1,478,279 - HP15_1401 0.37 -0.7 1,478,400 - HP15_1401 0.42 -0.5 1,478,417 - HP15_1401 0.43 -0.5 1,478,420 + HP15_1401 0.43 +0.1
Or see this region's nucleotide sequence