Strain Fitness in Marinobacter adhaerens HP15 around HP15_1400

Experiment: L-Phenylalanine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1399 and HP15_1400 are separated by 30 nucleotidesHP15_1400 and HP15_1401 are separated by 78 nucleotides HP15_1399: HP15_1399 - metal-dependent hydrolase-like protein, at 1,475,369 to 1,476,334 _1399 HP15_1400: HP15_1400 - fructose-bisphosphate aldolase B, at 1,476,365 to 1,477,429 _1400 HP15_1401: HP15_1401 - shikimate/quinate 5-dehydrogenase, at 1,477,508 to 1,479,619 _1401 Position (kb) 1476 1477 1478Strain fitness (log2 ratio) -2 -1 0 1 2at 1475.453 kb on + strandat 1475.461 kb on - strandat 1475.461 kb on - strandat 1475.499 kb on - strand, within HP15_1399at 1475.503 kb on - strand, within HP15_1399at 1475.667 kb on + strand, within HP15_1399at 1475.675 kb on - strand, within HP15_1399at 1475.835 kb on - strand, within HP15_1399at 1475.937 kb on - strand, within HP15_1399at 1475.969 kb on + strand, within HP15_1399at 1475.999 kb on + strand, within HP15_1399at 1476.212 kb on + strand, within HP15_1399at 1476.340 kb on + strandat 1476.438 kb on + strandat 1476.525 kb on + strand, within HP15_1400at 1476.526 kb on + strand, within HP15_1400at 1476.533 kb on - strand, within HP15_1400at 1476.791 kb on + strand, within HP15_1400at 1476.814 kb on - strand, within HP15_1400at 1476.928 kb on - strand, within HP15_1400at 1477.012 kb on + strand, within HP15_1400at 1477.034 kb on + strand, within HP15_1400at 1477.096 kb on + strand, within HP15_1400at 1477.216 kb on + strand, within HP15_1400at 1477.238 kb on + strand, within HP15_1400at 1477.269 kb on + strand, within HP15_1400at 1477.270 kb on - strand, within HP15_1400at 1477.392 kb on - strandat 1477.448 kb on - strandat 1477.557 kb on + strandat 1477.577 kb on - strandat 1477.670 kb on + strandat 1477.670 kb on + strandat 1477.670 kb on + strandat 1477.706 kb on + strandat 1478.103 kb on - strand, within HP15_1401at 1478.103 kb on - strand, within HP15_1401at 1478.105 kb on + strand, within HP15_1401at 1478.164 kb on - strand, within HP15_1401at 1478.203 kb on - strand, within HP15_1401at 1478.261 kb on + strand, within HP15_1401at 1478.279 kb on - strand, within HP15_1401at 1478.400 kb on - strand, within HP15_1401at 1478.417 kb on - strand, within HP15_1401at 1478.420 kb on + strand, within HP15_1401

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine as (N)
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1,475,453 + +2.2
1,475,461 - -1.8
1,475,461 - -0.3
1,475,499 - HP15_1399 0.13 -0.7
1,475,503 - HP15_1399 0.14 -0.1
1,475,667 + HP15_1399 0.31 -0.1
1,475,675 - HP15_1399 0.32 -1.2
1,475,835 - HP15_1399 0.48 -1.6
1,475,937 - HP15_1399 0.59 -0.3
1,475,969 + HP15_1399 0.62 -0.5
1,475,999 + HP15_1399 0.65 -0.6
1,476,212 + HP15_1399 0.87 -0.2
1,476,340 + +0.4
1,476,438 + +0.1
1,476,525 + HP15_1400 0.15 -0.5
1,476,526 + HP15_1400 0.15 -0.6
1,476,533 - HP15_1400 0.16 -0.6
1,476,791 + HP15_1400 0.40 +0.5
1,476,814 - HP15_1400 0.42 -0.3
1,476,928 - HP15_1400 0.53 -0.3
1,477,012 + HP15_1400 0.61 -0.2
1,477,034 + HP15_1400 0.63 +1.2
1,477,096 + HP15_1400 0.69 +0.2
1,477,216 + HP15_1400 0.80 +0.0
1,477,238 + HP15_1400 0.82 -0.1
1,477,269 + HP15_1400 0.85 -0.2
1,477,270 - HP15_1400 0.85 +1.7
1,477,392 - -0.4
1,477,448 - +0.2
1,477,557 + -0.3
1,477,577 - +0.8
1,477,670 + -0.4
1,477,670 + -0.6
1,477,670 + +0.3
1,477,706 + -0.1
1,478,103 - HP15_1401 0.28 -0.0
1,478,103 - HP15_1401 0.28 -0.8
1,478,105 + HP15_1401 0.28 -1.4
1,478,164 - HP15_1401 0.31 -0.3
1,478,203 - HP15_1401 0.33 +0.6
1,478,261 + HP15_1401 0.36 +1.1
1,478,279 - HP15_1401 0.37 -0.7
1,478,400 - HP15_1401 0.42 -0.5
1,478,417 - HP15_1401 0.43 -0.5
1,478,420 + HP15_1401 0.43 +0.1

Or see this region's nucleotide sequence