Experiment: L-Phenylalanine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1395 and HP15_1396 are separated by 6 nucleotides HP15_1396 and HP15_1397 are separated by 314 nucleotides HP15_1397 and HP15_1398 are separated by 137 nucleotides
HP15_1395: HP15_1395 - heat shock protein 90, at 1,469,452 to 1,471,344
_1395
HP15_1396: HP15_1396 - conserved hypothetical protein, at 1,471,351 to 1,471,569
_1396
HP15_1397: HP15_1397 - peroxidase/catalase HPI, at 1,471,884 to 1,474,106
_1397
HP15_1398: HP15_1398 - tRNA-dihydrouridine synthase C, at 1,474,244 to 1,475,215
_1398
Position (kb)
1471
1472
1473
1474
1475 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1470.904 kb on - strand, within HP15_1395 at 1470.917 kb on + strand, within HP15_1395 at 1470.979 kb on + strand, within HP15_1395 at 1471.254 kb on - strand at 1471.256 kb on + strand at 1471.382 kb on + strand, within HP15_1396 at 1471.390 kb on - strand, within HP15_1396 at 1471.390 kb on - strand, within HP15_1396 at 1471.410 kb on + strand, within HP15_1396 at 1471.423 kb on + strand, within HP15_1396 at 1471.433 kb on - strand, within HP15_1396 at 1471.446 kb on - strand, within HP15_1396 at 1471.563 kb on + strand at 1471.571 kb on - strand at 1471.669 kb on - strand at 1471.684 kb on - strand at 1471.693 kb on + strand at 1471.884 kb on - strand at 1471.891 kb on + strand at 1471.949 kb on - strand at 1472.052 kb on - strand at 1472.311 kb on - strand, within HP15_1397 at 1472.681 kb on - strand, within HP15_1397 at 1472.799 kb on - strand, within HP15_1397 at 1472.806 kb on - strand, within HP15_1397 at 1472.835 kb on - strand, within HP15_1397 at 1472.897 kb on + strand, within HP15_1397 at 1472.925 kb on - strand, within HP15_1397 at 1473.121 kb on - strand, within HP15_1397 at 1473.121 kb on - strand, within HP15_1397 at 1473.216 kb on - strand, within HP15_1397 at 1473.329 kb on + strand, within HP15_1397 at 1473.329 kb on + strand, within HP15_1397 at 1473.367 kb on + strand, within HP15_1397 at 1473.541 kb on - strand, within HP15_1397 at 1473.694 kb on - strand, within HP15_1397 at 1473.908 kb on - strand at 1473.942 kb on + strand at 1474.003 kb on + strand at 1474.074 kb on + strand at 1474.110 kb on - strand at 1474.121 kb on + strand at 1474.325 kb on - strand at 1474.431 kb on + strand, within HP15_1398 at 1474.506 kb on + strand, within HP15_1398 at 1474.558 kb on + strand, within HP15_1398 at 1474.566 kb on - strand, within HP15_1398 at 1474.577 kb on - strand, within HP15_1398 at 1474.582 kb on - strand, within HP15_1398 at 1474.621 kb on + strand, within HP15_1398 at 1474.719 kb on + strand, within HP15_1398 at 1474.817 kb on + strand, within HP15_1398 at 1474.866 kb on + strand, within HP15_1398 at 1474.875 kb on + strand, within HP15_1398 at 1474.883 kb on - strand, within HP15_1398 at 1474.934 kb on + strand, within HP15_1398 at 1474.989 kb on - strand, within HP15_1398 at 1475.000 kb on - strand, within HP15_1398 at 1475.051 kb on - strand, within HP15_1398
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine as (N) remove 1,470,904 - HP15_1395 0.77 +0.2 1,470,917 + HP15_1395 0.77 -0.5 1,470,979 + HP15_1395 0.81 -0.3 1,471,254 - +0.8 1,471,256 + +0.7 1,471,382 + HP15_1396 0.14 -0.1 1,471,390 - HP15_1396 0.18 -0.4 1,471,390 - HP15_1396 0.18 +1.2 1,471,410 + HP15_1396 0.27 +1.1 1,471,423 + HP15_1396 0.33 -0.2 1,471,433 - HP15_1396 0.37 -0.5 1,471,446 - HP15_1396 0.43 -0.7 1,471,563 + +0.1 1,471,571 - -0.3 1,471,669 - +0.5 1,471,684 - +2.1 1,471,693 + +0.1 1,471,884 - -0.7 1,471,891 + -0.3 1,471,949 - -0.1 1,472,052 - -2.5 1,472,311 - HP15_1397 0.19 +1.0 1,472,681 - HP15_1397 0.36 +0.0 1,472,799 - HP15_1397 0.41 -1.5 1,472,806 - HP15_1397 0.41 -0.4 1,472,835 - HP15_1397 0.43 -0.1 1,472,897 + HP15_1397 0.46 +1.0 1,472,925 - HP15_1397 0.47 +0.9 1,473,121 - HP15_1397 0.56 +0.1 1,473,121 - HP15_1397 0.56 +0.3 1,473,216 - HP15_1397 0.60 -0.7 1,473,329 + HP15_1397 0.65 -0.4 1,473,329 + HP15_1397 0.65 +1.2 1,473,367 + HP15_1397 0.67 +0.4 1,473,541 - HP15_1397 0.75 -0.8 1,473,694 - HP15_1397 0.81 -0.7 1,473,908 - -1.2 1,473,942 + -0.1 1,474,003 + -0.3 1,474,074 + +0.0 1,474,110 - -0.7 1,474,121 + -0.2 1,474,325 - +0.8 1,474,431 + HP15_1398 0.19 -1.3 1,474,506 + HP15_1398 0.27 +0.9 1,474,558 + HP15_1398 0.32 -0.1 1,474,566 - HP15_1398 0.33 -0.8 1,474,577 - HP15_1398 0.34 -1.6 1,474,582 - HP15_1398 0.35 -0.4 1,474,621 + HP15_1398 0.39 -0.2 1,474,719 + HP15_1398 0.49 -0.1 1,474,817 + HP15_1398 0.59 -1.1 1,474,866 + HP15_1398 0.64 +0.0 1,474,875 + HP15_1398 0.65 -0.3 1,474,883 - HP15_1398 0.66 -0.2 1,474,934 + HP15_1398 0.71 +1.8 1,474,989 - HP15_1398 0.77 +0.1 1,475,000 - HP15_1398 0.78 +0.1 1,475,051 - HP15_1398 0.83 -0.8
Or see this region's nucleotide sequence