Strain Fitness in Shewanella amazonensis SB2B around Sama_2759

Experiment: D,L-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_2758 and Sama_2759 are separated by 121 nucleotidesSama_2759 and Sama_2760 are separated by 380 nucleotides Sama_2758: Sama_2758 - erythrose 4-phosphate dehydrogenase (RefSeq), at 3,297,714 to 3,298,730 _2758 Sama_2759: Sama_2759 - transketolase (RefSeq), at 3,298,852 to 3,300,843 _2759 Sama_2760: Sama_2760 - S-adenosylmethionine synthetase (RefSeq), at 3,301,224 to 3,302,375 _2760 Position (kb) 3298 3299 3300 3301Strain fitness (log2 ratio) -3 -2 -1 0 1at 3297.910 kb on - strand, within Sama_2758at 3298.328 kb on - strand, within Sama_2758at 3298.328 kb on - strand, within Sama_2758at 3298.369 kb on - strand, within Sama_2758at 3298.375 kb on - strand, within Sama_2758at 3298.455 kb on + strand, within Sama_2758at 3298.456 kb on - strand, within Sama_2758at 3298.456 kb on - strand, within Sama_2758at 3298.730 kb on + strandat 3298.731 kb on - strandat 3298.731 kb on - strandat 3298.731 kb on - strandat 3300.891 kb on - strandat 3300.891 kb on - strandat 3300.891 kb on - strandat 3300.924 kb on + strandat 3301.094 kb on - strandat 3301.094 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate
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3,297,910 - Sama_2758 0.19 -1.3
3,298,328 - Sama_2758 0.60 -2.9
3,298,328 - Sama_2758 0.60 -1.3
3,298,369 - Sama_2758 0.64 -1.3
3,298,375 - Sama_2758 0.65 -2.1
3,298,455 + Sama_2758 0.73 -1.9
3,298,456 - Sama_2758 0.73 -1.3
3,298,456 - Sama_2758 0.73 -2.7
3,298,730 + -1.3
3,298,731 - +0.1
3,298,731 - +0.8
3,298,731 - +1.2
3,300,891 - +0.5
3,300,891 - +0.7
3,300,891 - -1.7
3,300,924 + +0.4
3,301,094 - +0.7
3,301,094 - -0.3

Or see this region's nucleotide sequence