Strain Fitness in Shewanella amazonensis SB2B around Sama_3190

Experiment: D,L-Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D,L-Lactate
3,784,103	+		Sama_3189	0.52	+0.1
3,784,103	+		Sama_3189	0.52	+1.0
3,784,104	-		Sama_3189	0.52	+2.0
3,784,104	-		Sama_3189	0.52	+1.3
3,784,124	+		Sama_3189	0.54	-1.6
3,784,125	-		Sama_3189	0.54	-0.9
3,784,125	-		Sama_3189	0.54	-0.3
3,784,132	+		Sama_3189	0.54	-0.3
3,784,132	+		Sama_3189	0.54	-1.0
3,784,133	-		Sama_3189	0.54	+0.5
3,784,220	+		Sama_3189	0.62	+0.5
3,784,220	+		Sama_3189	0.62	+0.4
3,784,220	+		Sama_3189	0.62	+2.0
3,784,220	+		Sama_3189	0.62	+0.4
3,784,220	+		Sama_3189	0.62	+2.4
3,784,221	-		Sama_3189	0.62	+0.9
3,784,221	-		Sama_3189	0.62	+0.4
3,784,221	-		Sama_3189	0.62	-2.3
3,784,222	+		Sama_3189	0.62	+1.0
3,784,222	-		Sama_3189	0.62	+0.6
3,784,222	+		Sama_3189	0.62	+0.1
3,784,223	-		Sama_3189	0.62	+0.7
3,784,242	+		Sama_3189	0.63	-0.3
3,784,285	-		Sama_3189	0.67	+0.7
3,784,347	-		Sama_3189	0.72	+1.1
3,784,347	-		Sama_3189	0.72	+0.7
3,784,347	-		Sama_3189	0.72	-1.9
3,784,395	+		Sama_3189	0.76	+0.3
3,784,395	+		Sama_3189	0.76	-0.0
3,784,605	+				+0.5
3,784,605	+				+0.7
3,784,606	-				-1.5
3,784,619	+				-2.1
3,784,619	+				+0.6
3,784,620	-				-0.5
3,784,652	+				+0.3
3,784,652	+				+0.7
3,784,653	-				+0.1
3,784,653	-				-0.3
3,784,653	-				+0.3
3,784,753	+				-1.5
3,784,814	+				+0.4
3,784,815	-				+0.2
3,784,815	-				-0.5
3,784,815	-				+0.1
3,784,815	-				+1.3
3,784,815	-				-0.1
3,784,815	-				-1.6
3,784,815	-				-2.9
3,784,815	-				+0.4
3,784,828	+				+0.6
3,784,828	+				+1.7
3,784,829	-				-0.9
3,784,829	-				+0.4
3,784,829	-				-0.1
3,784,843	-				-0.5
3,784,883	-				+0.7
3,784,883	-				-1.1
3,784,883	-				+0.7
3,785,062	+				-0.4
3,785,063	-				-1.0
3,785,063	-				-1.8
3,785,102	+				-1.3
3,785,102	+				-0.2
3,785,103	-				+0.7
3,785,140	+		Sama_3190	0.11	+0.7
3,785,140	+		Sama_3190	0.11	-2.3
3,785,140	+		Sama_3190	0.11	+0.5
3,785,140	+		Sama_3190	0.11	+0.3
3,785,141	-		Sama_3190	0.11	-2.3
3,785,141	-		Sama_3190	0.11	+0.2
3,785,141	-		Sama_3190	0.11	+0.7
3,785,171	+		Sama_3190	0.18	+0.5
3,785,172	-		Sama_3190	0.18	+0.5
3,785,182	+		Sama_3190	0.21	-0.3
3,785,336	+		Sama_3190	0.57	-0.3
3,785,336	+		Sama_3190	0.57	+0.4
3,785,336	+		Sama_3190	0.57	+0.1
3,785,337	-		Sama_3190	0.57	+0.8
3,785,337	-		Sama_3190	0.57	+1.2
3,785,337	-		Sama_3190	0.57	-0.3
3,785,346	+		Sama_3190	0.59	-1.1
3,785,346	+		Sama_3190	0.59	+1.7
3,785,346	+		Sama_3190	0.59	-0.1
3,785,346	+		Sama_3190	0.59	+1.5
3,785,346	+		Sama_3190	0.59	+0.7
3,785,346	+		Sama_3190	0.59	+0.9
3,785,346	+		Sama_3190	0.59	+0.5
3,785,346	+		Sama_3190	0.59	+0.6
3,785,346	+		Sama_3190	0.59	+1.0
3,785,346	+		Sama_3190	0.59	+2.7
3,785,347	-		Sama_3190	0.59	+0.5
3,785,347	-		Sama_3190	0.59	+0.7
3,785,347	-		Sama_3190	0.59	-0.6
3,785,347	-		Sama_3190	0.59	+0.2
3,785,347	-		Sama_3190	0.59	+1.3
3,785,347	-		Sama_3190	0.59	+0.5
3,785,347	-		Sama_3190	0.59	+0.6
3,785,347	-		Sama_3190	0.59	+1.5
3,785,347	-		Sama_3190	0.59	-0.1
3,785,347	-		Sama_3190	0.59	+1.6
3,785,347	-		Sama_3190	0.59	+1.3
3,785,347	-		Sama_3190	0.59	+1.5
3,785,566	+				+1.3
3,785,566	+				+0.1
3,785,566	+				+0.7
3,785,567	-				+1.0
3,785,567	-				-0.3
3,785,567	-				+0.2
3,785,612	+				-1.1
3,785,612	+				+0.2
3,785,612	+				-1.3
3,785,612	+				-0.3
3,785,612	+				+0.7
3,785,612	+				+0.2
3,785,612	+				-1.1
3,785,612	+				-0.3
3,785,613	-				-1.3
3,785,613	-				-0.3
3,785,613	-				+0.6
3,785,613	-				+0.7
3,785,613	-				+1.3
3,785,613	-				+2.3
3,785,613	-				+0.4
3,785,613	-				-0.6
3,785,613	-				-0.3
3,785,691	+		Sama_3191	0.45	+0.1
3,785,691	+		Sama_3191	0.45	+0.5
3,785,692	-		Sama_3191	0.46	+0.7
3,785,782	-				+0.7
3,785,782	-				+1.3
3,785,782	-				+0.7
3,785,803	+				+1.0
3,785,804	-				-0.5
3,785,804	-				-1.1
3,785,804	-				+0.7
3,785,807	-				+0.9
3,785,807	-				+0.1
3,785,807	-				+1.8
3,785,809	-				+0.3
3,785,830	+				+0.9
3,785,830	+				-0.3
3,785,831	-				-0.3
3,785,869	-		Sama_3192	0.14	-0.4
3,785,981	-		Sama_3192	0.44	+0.0
3,785,981	-		Sama_3192	0.44	-0.0
3,785,986	+		Sama_3192	0.45	+1.1
3,785,986	+		Sama_3192	0.45	-0.0
3,785,986	+		Sama_3192	0.45	-0.0
3,785,986	+		Sama_3192	0.45	+1.5
3,785,986	+		Sama_3192	0.45	-0.7
3,785,987	-		Sama_3192	0.45	+0.0
3,785,987	-		Sama_3192	0.45	-1.3
3,785,987	-		Sama_3192	0.45	+1.2
3,785,987	-		Sama_3192	0.45	+0.3
3,785,987	-		Sama_3192	0.45	-1.4
3,785,987	-		Sama_3192	0.45	-0.5
3,785,987	-		Sama_3192	0.45	+1.9
3,786,048	+		Sama_3192	0.62	+1.3
3,786,048	+		Sama_3192	0.62	-0.8
3,786,049	-		Sama_3192	0.62	-0.3
3,786,050	+		Sama_3192	0.62	+1.7
3,786,050	+		Sama_3192	0.62	+1.1
3,786,050	+		Sama_3192	0.62	+0.7
3,786,050	+		Sama_3192	0.62	+1.0
3,786,050	+		Sama_3192	0.62	+0.5
3,786,050	+		Sama_3192	0.62	+0.2
3,786,050	+		Sama_3192	0.62	+0.0
3,786,051	-		Sama_3192	0.63	+0.7
3,786,051	-		Sama_3192	0.63	+0.6
3,786,051	-		Sama_3192	0.63	-1.9
3,786,051	-		Sama_3192	0.63	+1.0
3,786,051	-		Sama_3192	0.63	+0.6
3,786,080	+		Sama_3192	0.70	+0.1
3,786,081	-		Sama_3192	0.71	+0.3
3,786,081	-		Sama_3192	0.71	-1.3
3,786,081	-		Sama_3192	0.71	+3.0
3,786,113	+		Sama_3192	0.79	-0.3
3,786,154	+				+0.5
3,786,154	+				+1.1
3,786,155	-				+1.3
3,786,155	-				-0.2
3,786,162	+				+0.2
3,786,184	+				-0.0
3,786,184	+				+0.6
3,786,184	+				-1.6
3,786,184	+				+0.8
3,786,185	-				+1.7
3,786,185	-				-0.5
3,786,185	-				+1.2
3,786,189	+				+1.5
3,786,189	+				+1.5
3,786,189	+				+1.3
3,786,189	+				-2.3
3,786,189	+				+1.3
3,786,189	+				+1.3
3,786,189	+				-0.6
3,786,189	+				-0.3
3,786,189	+				+0.4
3,786,190	-				+0.1
3,786,190	-				-0.1
3,786,190	-				-0.1
3,786,190	-				+0.7
3,786,190	-				+0.5
3,786,190	-				+0.6
3,786,190	-				+1.5
3,786,190	-				+1.0
3,786,190	-				+0.7
3,786,239	+				+0.4
3,786,240	-				+0.7
3,786,240	-				+1.7
3,786,240	-				-2.3
3,786,240	-				-0.2
3,786,262	+				-0.3
3,786,262	+				+0.2
3,786,262	+				-1.9
3,786,263	-				-1.9
3,786,275	-				-0.3
3,786,395	+		Sama_3193	0.28	-1.9
3,786,395	+		Sama_3193	0.28	+0.1
3,786,395	+		Sama_3193	0.28	-0.7
3,786,396	-		Sama_3193	0.28	-1.0
3,786,396	-		Sama_3193	0.28	+0.6
3,786,433	+		Sama_3193	0.37	-1.3
3,786,434	-		Sama_3193	0.37	+1.4
3,786,435	+		Sama_3193	0.37	+0.3
3,786,492	+		Sama_3193	0.51	+3.0