Strain Fitness in Shewanella amazonensis SB2B around Sama_R0115

Experiment: D,L-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_2606 and Sama_R0113 are separated by 302 nucleotidesSama_R0113 and Sama_R0114 are separated by 52 nucleotidesSama_R0114 and Sama_R0115 are separated by 37 nucleotidesSama_R0115 and Sama_R0116 are separated by 30 nucleotidesSama_R0116 and Sama_2607 are separated by 151 nucleotides Sama_2606: Sama_2606 - putative lipoprotein (RefSeq), at 3,119,410 to 3,120,261 _2606 Sama_R0113: Sama_R0113 - tRNA-Phe (RefSeq), at 3,120,564 to 3,120,639 _R0113 Sama_R0114: Sama_R0114 - tRNA-Leu (RefSeq), at 3,120,692 to 3,120,778 _R0114 Sama_R0115: Sama_R0115 - tRNA-Leu (RefSeq), at 3,120,816 to 3,120,902 _R0115 Sama_R0116: Sama_R0116 - tRNA-Leu (RefSeq), at 3,120,933 to 3,121,019 _R0116 Sama_2607: Sama_2607 - putative methyl-accepting chemotaxis sensory transducer (RefSeq), at 3,121,171 to 3,122,796 _2607 Position (kb) 3120 3121Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3120.259 kb on + strandat 3120.279 kb on + strandat 3120.292 kb on + strandat 3120.292 kb on + strandat 3120.293 kb on - strandat 3120.320 kb on - strandat 3120.358 kb on + strandat 3120.358 kb on + strandat 3120.359 kb on - strandat 3120.359 kb on - strandat 3120.381 kb on - strandat 3120.381 kb on - strandat 3120.381 kb on - strandat 3120.382 kb on + strandat 3120.382 kb on + strandat 3120.383 kb on - strandat 3120.406 kb on + strandat 3120.406 kb on + strandat 3120.407 kb on - strandat 3120.407 kb on - strandat 3120.407 kb on - strandat 3120.427 kb on + strandat 3120.428 kb on - strandat 3120.428 kb on - strandat 3120.790 kb on + strandat 3120.790 kb on + strandat 3120.790 kb on + strandat 3120.790 kb on + strandat 3120.790 kb on + strandat 3120.790 kb on + strandat 3120.790 kb on + strandat 3120.794 kb on + strandat 3120.794 kb on + strandat 3120.794 kb on + strandat 3120.794 kb on + strandat 3120.794 kb on + strandat 3120.794 kb on + strandat 3120.800 kb on + strandat 3120.800 kb on + strandat 3120.905 kb on + strandat 3120.905 kb on + strandat 3120.921 kb on + strandat 3120.927 kb on + strandat 3120.927 kb on + strandat 3120.927 kb on + strandat 3120.983 kb on + strand, within Sama_R0116at 3120.983 kb on + strand, within Sama_R0116at 3121.015 kb on + strandat 3121.026 kb on + strandat 3121.026 kb on + strandat 3121.026 kb on + strandat 3121.059 kb on + strandat 3121.059 kb on + strandat 3121.060 kb on - strandat 3121.060 kb on - strandat 3121.062 kb on + strandat 3121.091 kb on + strandat 3121.091 kb on + strandat 3121.092 kb on - strandat 3121.093 kb on + strandat 3121.093 kb on + strandat 3121.093 kb on + strandat 3121.093 kb on + strandat 3121.094 kb on - strandat 3121.094 kb on - strandat 3121.094 kb on - strandat 3121.097 kb on + strandat 3121.097 kb on + strandat 3121.097 kb on + strandat 3121.097 kb on + strandat 3121.097 kb on + strandat 3121.097 kb on + strandat 3121.097 kb on + strandat 3121.097 kb on + strandat 3121.097 kb on + strandat 3121.097 kb on + strandat 3121.097 kb on + strandat 3121.097 kb on + strandat 3121.097 kb on + strandat 3121.098 kb on - strandat 3121.098 kb on - strandat 3121.098 kb on - strandat 3121.098 kb on - strandat 3121.098 kb on - strandat 3121.098 kb on - strandat 3121.098 kb on - strandat 3121.098 kb on - strandat 3121.099 kb on + strandat 3121.099 kb on + strandat 3121.099 kb on + strandat 3121.099 kb on + strandat 3121.099 kb on + strandat 3121.099 kb on + strandat 3121.100 kb on - strandat 3121.100 kb on - strandat 3121.100 kb on - strandat 3121.100 kb on - strandat 3121.100 kb on - strandat 3121.100 kb on - strandat 3121.103 kb on + strandat 3121.103 kb on + strandat 3121.104 kb on - strandat 3121.104 kb on - strandat 3121.260 kb on + strandat 3121.260 kb on + strandat 3121.260 kb on + strandat 3121.261 kb on - strandat 3121.261 kb on - strandat 3121.261 kb on - strandat 3121.261 kb on - strandat 3121.274 kb on + strandat 3121.274 kb on + strandat 3121.274 kb on + strandat 3121.297 kb on + strandat 3121.298 kb on - strandat 3121.298 kb on - strandat 3121.298 kb on - strandat 3121.299 kb on + strandat 3121.335 kb on + strand, within Sama_2607at 3121.377 kb on + strand, within Sama_2607at 3121.377 kb on + strand, within Sama_2607at 3121.378 kb on - strand, within Sama_2607at 3121.378 kb on - strand, within Sama_2607at 3121.427 kb on + strand, within Sama_2607at 3121.428 kb on - strand, within Sama_2607at 3121.428 kb on - strand, within Sama_2607at 3121.434 kb on + strand, within Sama_2607at 3121.435 kb on - strand, within Sama_2607at 3121.435 kb on - strand, within Sama_2607at 3121.443 kb on + strand, within Sama_2607at 3121.445 kb on + strand, within Sama_2607at 3121.445 kb on + strand, within Sama_2607at 3121.446 kb on - strand, within Sama_2607at 3121.446 kb on - strand, within Sama_2607at 3121.465 kb on + strand, within Sama_2607at 3121.465 kb on + strand, within Sama_2607at 3121.465 kb on + strand, within Sama_2607at 3121.465 kb on + strand, within Sama_2607at 3121.465 kb on + strand, within Sama_2607at 3121.465 kb on + strand, within Sama_2607at 3121.465 kb on + strand, within Sama_2607at 3121.465 kb on + strand, within Sama_2607at 3121.465 kb on + strand, within Sama_2607at 3121.465 kb on + strand, within Sama_2607at 3121.465 kb on + strand, within Sama_2607at 3121.465 kb on + strand, within Sama_2607at 3121.465 kb on + strand, within Sama_2607at 3121.465 kb on + strand, within Sama_2607at 3121.465 kb on + strand, within Sama_2607at 3121.465 kb on + strand, within Sama_2607at 3121.465 kb on + strand, within Sama_2607at 3121.465 kb on + strand, within Sama_2607at 3121.465 kb on + strand, within Sama_2607at 3121.465 kb on + strand, within Sama_2607at 3121.466 kb on - strand, within Sama_2607at 3121.466 kb on - strand, within Sama_2607at 3121.466 kb on - strand, within Sama_2607at 3121.466 kb on - strand, within Sama_2607at 3121.466 kb on - strand, within Sama_2607at 3121.466 kb on - strand, within Sama_2607at 3121.466 kb on - strand, within Sama_2607at 3121.466 kb on - strand, within Sama_2607at 3121.466 kb on - strand, within Sama_2607at 3121.466 kb on - strand, within Sama_2607at 3121.466 kb on - strand, within Sama_2607at 3121.466 kb on - strand, within Sama_2607at 3121.466 kb on - strand, within Sama_2607at 3121.466 kb on - strand, within Sama_2607at 3121.466 kb on - strand, within Sama_2607at 3121.466 kb on - strand, within Sama_2607at 3121.466 kb on - strand, within Sama_2607at 3121.466 kb on - strand, within Sama_2607at 3121.466 kb on - strand, within Sama_2607at 3121.466 kb on - strand, within Sama_2607at 3121.466 kb on - strand, within Sama_2607at 3121.467 kb on + strand, within Sama_2607at 3121.467 kb on + strand, within Sama_2607at 3121.467 kb on + strand, within Sama_2607at 3121.467 kb on + strand, within Sama_2607at 3121.467 kb on + strand, within Sama_2607at 3121.467 kb on + strand, within Sama_2607at 3121.467 kb on + strand, within Sama_2607at 3121.467 kb on + strand, within Sama_2607at 3121.467 kb on + strand, within Sama_2607at 3121.467 kb on + strand, within Sama_2607at 3121.467 kb on + strand, within Sama_2607at 3121.467 kb on + strand, within Sama_2607at 3121.467 kb on + strand, within Sama_2607at 3121.467 kb on + strand, within Sama_2607at 3121.467 kb on + strand, within Sama_2607at 3121.467 kb on + strand, within Sama_2607at 3121.467 kb on + strand, within Sama_2607at 3121.467 kb on + strand, within Sama_2607at 3121.467 kb on + strand, within Sama_2607at 3121.467 kb on + strand, within Sama_2607at 3121.467 kb on + strand, within Sama_2607at 3121.467 kb on + strand, within Sama_2607at 3121.467 kb on + strand, within Sama_2607at 3121.468 kb on - strand, within Sama_2607at 3121.468 kb on - strand, within Sama_2607at 3121.468 kb on - strand, within Sama_2607at 3121.468 kb on - strand, within Sama_2607at 3121.468 kb on - strand, within Sama_2607at 3121.468 kb on - strand, within Sama_2607at 3121.468 kb on - strand, within Sama_2607at 3121.468 kb on - strand, within Sama_2607at 3121.468 kb on - strand, within Sama_2607at 3121.468 kb on - strand, within Sama_2607at 3121.468 kb on - strand, within Sama_2607at 3121.468 kb on - strand, within Sama_2607at 3121.468 kb on - strand, within Sama_2607at 3121.468 kb on - strand, within Sama_2607at 3121.468 kb on - strand, within Sama_2607at 3121.523 kb on + strand, within Sama_2607at 3121.523 kb on + strand, within Sama_2607at 3121.524 kb on - strand, within Sama_2607at 3121.524 kb on - strand, within Sama_2607at 3121.524 kb on - strand, within Sama_2607at 3121.553 kb on + strand, within Sama_2607at 3121.554 kb on - strand, within Sama_2607at 3121.554 kb on - strand, within Sama_2607at 3121.554 kb on - strand, within Sama_2607at 3121.611 kb on + strand, within Sama_2607at 3121.611 kb on + strand, within Sama_2607at 3121.612 kb on - strand, within Sama_2607at 3121.631 kb on + strand, within Sama_2607at 3121.632 kb on - strand, within Sama_2607at 3121.632 kb on - strand, within Sama_2607at 3121.634 kb on + strand, within Sama_2607at 3121.634 kb on + strand, within Sama_2607at 3121.634 kb on + strand, within Sama_2607at 3121.634 kb on + strand, within Sama_2607at 3121.634 kb on + strand, within Sama_2607at 3121.634 kb on + strand, within Sama_2607at 3121.634 kb on + strand, within Sama_2607at 3121.634 kb on + strand, within Sama_2607at 3121.635 kb on - strand, within Sama_2607at 3121.635 kb on - strand, within Sama_2607at 3121.635 kb on - strand, within Sama_2607at 3121.635 kb on - strand, within Sama_2607at 3121.635 kb on - strand, within Sama_2607at 3121.635 kb on - strand, within Sama_2607at 3121.635 kb on - strand, within Sama_2607at 3121.635 kb on - strand, within Sama_2607at 3121.635 kb on - strand, within Sama_2607at 3121.709 kb on + strand, within Sama_2607at 3121.718 kb on + strand, within Sama_2607at 3121.719 kb on - strand, within Sama_2607at 3121.808 kb on + strand, within Sama_2607at 3121.808 kb on + strand, within Sama_2607at 3121.808 kb on + strand, within Sama_2607at 3121.881 kb on + strand, within Sama_2607at 3121.882 kb on - strand, within Sama_2607

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate
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3,120,259 + +0.9
3,120,279 + +0.2
3,120,292 + +1.2
3,120,292 + -1.6
3,120,293 - +0.4
3,120,320 - +1.6
3,120,358 + -0.2
3,120,358 + +0.2
3,120,359 - +2.0
3,120,359 - +0.0
3,120,381 - +0.3
3,120,381 - -0.3
3,120,381 - +1.4
3,120,382 + +0.3
3,120,382 + +2.3
3,120,383 - -1.9
3,120,406 + +0.4
3,120,406 + -0.7
3,120,407 - +1.2
3,120,407 - -0.3
3,120,407 - -1.0
3,120,427 + +1.6
3,120,428 - -0.1
3,120,428 - +0.2
3,120,790 + +0.3
3,120,790 + -0.6
3,120,790 + +0.1
3,120,790 + +0.3
3,120,790 + +1.1
3,120,790 + +0.4
3,120,790 + +0.4
3,120,794 + -0.6
3,120,794 + -0.1
3,120,794 + -0.1
3,120,794 + +0.6
3,120,794 + +1.6
3,120,794 + +0.6
3,120,800 + -0.6
3,120,800 + +0.4
3,120,905 + +0.9
3,120,905 + +1.0
3,120,921 + +0.9
3,120,927 + -0.9
3,120,927 + +0.0
3,120,927 + -0.1
3,120,983 + Sama_R0116 0.57 +2.4
3,120,983 + Sama_R0116 0.57 +1.6
3,121,015 + +0.2
3,121,026 + +0.6
3,121,026 + -0.3
3,121,026 + +0.3
3,121,059 + -0.6
3,121,059 + -1.6
3,121,060 - +0.8
3,121,060 - +0.2
3,121,062 + +0.9
3,121,091 + -0.6
3,121,091 + +0.4
3,121,092 - +0.7
3,121,093 + +0.8
3,121,093 + +2.8
3,121,093 + +1.4
3,121,093 + -0.3
3,121,094 - +1.4
3,121,094 - +0.4
3,121,094 - +0.1
3,121,097 + -1.0
3,121,097 + +0.5
3,121,097 + +1.6
3,121,097 + +0.3
3,121,097 + -0.0
3,121,097 + +0.1
3,121,097 + -1.3
3,121,097 + +0.4
3,121,097 + -0.6
3,121,097 + +0.0
3,121,097 + +0.2
3,121,097 + +0.8
3,121,097 + -2.0
3,121,098 - +0.1
3,121,098 - +0.8
3,121,098 - -0.1
3,121,098 - -0.3
3,121,098 - +1.3
3,121,098 - -2.6
3,121,098 - -1.4
3,121,098 - +0.8
3,121,099 + -0.0
3,121,099 + +1.0
3,121,099 + -2.4
3,121,099 + -0.1
3,121,099 + -1.6
3,121,099 + +1.0
3,121,100 - +0.4
3,121,100 - +0.2
3,121,100 - -2.6
3,121,100 - -1.1
3,121,100 - +0.4
3,121,100 - -0.1
3,121,103 + -0.4
3,121,103 + +0.5
3,121,104 - +0.4
3,121,104 - -1.6
3,121,260 + +0.6
3,121,260 + +0.0
3,121,260 + +2.3
3,121,261 - -0.3
3,121,261 - -0.6
3,121,261 - -1.6
3,121,261 - +0.2
3,121,274 + +0.6
3,121,274 + +0.4
3,121,274 + -0.2
3,121,297 + -1.1
3,121,298 - -1.6
3,121,298 - +1.8
3,121,298 - -0.6
3,121,299 + +0.8
3,121,335 + Sama_2607 0.10 -0.1
3,121,377 + Sama_2607 0.13 -0.1
3,121,377 + Sama_2607 0.13 -1.0
3,121,378 - Sama_2607 0.13 -0.2
3,121,378 - Sama_2607 0.13 +1.9
3,121,427 + Sama_2607 0.16 +0.8
3,121,428 - Sama_2607 0.16 +0.0
3,121,428 - Sama_2607 0.16 -0.7
3,121,434 + Sama_2607 0.16 +0.4
3,121,435 - Sama_2607 0.16 +0.7
3,121,435 - Sama_2607 0.16 -0.3
3,121,443 + Sama_2607 0.17 -0.9
3,121,445 + Sama_2607 0.17 -0.4
3,121,445 + Sama_2607 0.17 +0.6
3,121,446 - Sama_2607 0.17 +0.4
3,121,446 - Sama_2607 0.17 +0.7
3,121,465 + Sama_2607 0.18 +3.1
3,121,465 + Sama_2607 0.18 -0.1
3,121,465 + Sama_2607 0.18 -1.6
3,121,465 + Sama_2607 0.18 +0.4
3,121,465 + Sama_2607 0.18 +1.0
3,121,465 + Sama_2607 0.18 -0.6
3,121,465 + Sama_2607 0.18 -1.9
3,121,465 + Sama_2607 0.18 +1.1
3,121,465 + Sama_2607 0.18 +1.0
3,121,465 + Sama_2607 0.18 -0.9
3,121,465 + Sama_2607 0.18 +0.7
3,121,465 + Sama_2607 0.18 -0.2
3,121,465 + Sama_2607 0.18 +0.4
3,121,465 + Sama_2607 0.18 -0.6
3,121,465 + Sama_2607 0.18 -0.1
3,121,465 + Sama_2607 0.18 +1.8
3,121,465 + Sama_2607 0.18 +1.3
3,121,465 + Sama_2607 0.18 -0.7
3,121,465 + Sama_2607 0.18 +1.0
3,121,465 + Sama_2607 0.18 +0.8
3,121,466 - Sama_2607 0.18 +0.8
3,121,466 - Sama_2607 0.18 -0.2
3,121,466 - Sama_2607 0.18 -0.2
3,121,466 - Sama_2607 0.18 +1.4
3,121,466 - Sama_2607 0.18 -0.7
3,121,466 - Sama_2607 0.18 -1.6
3,121,466 - Sama_2607 0.18 +0.3
3,121,466 - Sama_2607 0.18 -0.3
3,121,466 - Sama_2607 0.18 -2.4
3,121,466 - Sama_2607 0.18 -1.1
3,121,466 - Sama_2607 0.18 -1.1
3,121,466 - Sama_2607 0.18 +0.0
3,121,466 - Sama_2607 0.18 +0.4
3,121,466 - Sama_2607 0.18 +1.4
3,121,466 - Sama_2607 0.18 +0.9
3,121,466 - Sama_2607 0.18 -1.7
3,121,466 - Sama_2607 0.18 -0.1
3,121,466 - Sama_2607 0.18 -1.3
3,121,466 - Sama_2607 0.18 -0.6
3,121,466 - Sama_2607 0.18 -0.9
3,121,466 - Sama_2607 0.18 -0.2
3,121,467 + Sama_2607 0.18 -0.3
3,121,467 + Sama_2607 0.18 +0.2
3,121,467 + Sama_2607 0.18 -1.0
3,121,467 + Sama_2607 0.18 -0.6
3,121,467 + Sama_2607 0.18 -0.6
3,121,467 + Sama_2607 0.18 +0.2
3,121,467 + Sama_2607 0.18 +0.7
3,121,467 + Sama_2607 0.18 -1.1
3,121,467 + Sama_2607 0.18 -0.3
3,121,467 + Sama_2607 0.18 +0.9
3,121,467 + Sama_2607 0.18 +1.0
3,121,467 + Sama_2607 0.18 +0.1
3,121,467 + Sama_2607 0.18 -1.1
3,121,467 + Sama_2607 0.18 +0.1
3,121,467 + Sama_2607 0.18 -0.6
3,121,467 + Sama_2607 0.18 +1.8
3,121,467 + Sama_2607 0.18 +0.0
3,121,467 + Sama_2607 0.18 -0.2
3,121,467 + Sama_2607 0.18 -0.6
3,121,467 + Sama_2607 0.18 +0.9
3,121,467 + Sama_2607 0.18 +1.4
3,121,467 + Sama_2607 0.18 -2.1
3,121,467 + Sama_2607 0.18 +0.6
3,121,468 - Sama_2607 0.18 +0.7
3,121,468 - Sama_2607 0.18 +0.3
3,121,468 - Sama_2607 0.18 -1.0
3,121,468 - Sama_2607 0.18 +0.8
3,121,468 - Sama_2607 0.18 +1.0
3,121,468 - Sama_2607 0.18 +1.4
3,121,468 - Sama_2607 0.18 +0.4
3,121,468 - Sama_2607 0.18 +0.4
3,121,468 - Sama_2607 0.18 +0.2
3,121,468 - Sama_2607 0.18 -1.0
3,121,468 - Sama_2607 0.18 -1.8
3,121,468 - Sama_2607 0.18 -0.6
3,121,468 - Sama_2607 0.18 +0.2
3,121,468 - Sama_2607 0.18 +1.3
3,121,468 - Sama_2607 0.18 +0.2
3,121,523 + Sama_2607 0.22 -0.3
3,121,523 + Sama_2607 0.22 -0.7
3,121,524 - Sama_2607 0.22 -0.1
3,121,524 - Sama_2607 0.22 -2.1
3,121,524 - Sama_2607 0.22 +0.4
3,121,553 + Sama_2607 0.23 -2.9
3,121,554 - Sama_2607 0.24 +1.0
3,121,554 - Sama_2607 0.24 +2.7
3,121,554 - Sama_2607 0.24 -0.0
3,121,611 + Sama_2607 0.27 +0.4
3,121,611 + Sama_2607 0.27 +0.9
3,121,612 - Sama_2607 0.27 +1.8
3,121,631 + Sama_2607 0.28 +0.3
3,121,632 - Sama_2607 0.28 -0.1
3,121,632 - Sama_2607 0.28 -2.9
3,121,634 + Sama_2607 0.28 +1.3
3,121,634 + Sama_2607 0.28 -0.7
3,121,634 + Sama_2607 0.28 -0.6
3,121,634 + Sama_2607 0.28 +0.4
3,121,634 + Sama_2607 0.28 +0.4
3,121,634 + Sama_2607 0.28 +1.1
3,121,634 + Sama_2607 0.28 +0.8
3,121,634 + Sama_2607 0.28 +0.6
3,121,635 - Sama_2607 0.29 +0.9
3,121,635 - Sama_2607 0.29 +0.3
3,121,635 - Sama_2607 0.29 +0.6
3,121,635 - Sama_2607 0.29 -0.6
3,121,635 - Sama_2607 0.29 +1.0
3,121,635 - Sama_2607 0.29 +2.3
3,121,635 - Sama_2607 0.29 -0.6
3,121,635 - Sama_2607 0.29 +1.6
3,121,635 - Sama_2607 0.29 -3.1
3,121,709 + Sama_2607 0.33 +0.1
3,121,718 + Sama_2607 0.34 +1.3
3,121,719 - Sama_2607 0.34 -0.6
3,121,808 + Sama_2607 0.39 +0.4
3,121,808 + Sama_2607 0.39 -0.1
3,121,808 + Sama_2607 0.39 +0.1
3,121,881 + Sama_2607 0.44 +0.4
3,121,882 - Sama_2607 0.44 -0.2

Or see this region's nucleotide sequence