Strain Fitness in Shewanella amazonensis SB2B around Sama_0766

Experiment: D,L-Lactate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSama_0765 and Sama_0766 are separated by 21 nucleotidesSama_0766 and Sama_0767 are separated by 616 nucleotides Sama_0765: Sama_0765 - cobyric acid synthase (RefSeq), at 947,505 to 949,013 _0765 Sama_0766: Sama_0766 - cob(I)yrinic acid a,c-diamide adenosyltransferase (RefSeq), at 949,035 to 949,634 _0766 Sama_0767: Sama_0767 - putative methyl-accepting chemotaxis sensory transducer (RefSeq), at 950,251 to 951,891 _0767 Position (kb) 949 950Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 948.035 kb on - strand, within Sama_0765at 948.035 kb on - strand, within Sama_0765at 948.089 kb on + strand, within Sama_0765at 948.125 kb on + strand, within Sama_0765at 948.125 kb on + strand, within Sama_0765at 948.125 kb on + strand, within Sama_0765at 948.125 kb on + strand, within Sama_0765at 948.125 kb on + strand, within Sama_0765at 948.198 kb on + strand, within Sama_0765at 948.202 kb on + strand, within Sama_0765at 948.202 kb on + strand, within Sama_0765at 948.202 kb on + strand, within Sama_0765at 948.202 kb on + strand, within Sama_0765at 948.202 kb on + strand, within Sama_0765at 948.202 kb on + strand, within Sama_0765at 948.202 kb on + strand, within Sama_0765at 948.202 kb on + strand, within Sama_0765at 948.203 kb on - strand, within Sama_0765at 948.203 kb on - strand, within Sama_0765at 948.203 kb on - strand, within Sama_0765at 948.203 kb on - strand, within Sama_0765at 948.203 kb on - strand, within Sama_0765at 948.206 kb on + strand, within Sama_0765at 948.206 kb on + strand, within Sama_0765at 948.206 kb on + strand, within Sama_0765at 948.206 kb on + strand, within Sama_0765at 948.207 kb on - strand, within Sama_0765at 948.207 kb on - strand, within Sama_0765at 948.243 kb on + strand, within Sama_0765at 948.297 kb on + strand, within Sama_0765at 948.363 kb on + strand, within Sama_0765at 948.364 kb on - strand, within Sama_0765at 948.371 kb on + strand, within Sama_0765at 948.418 kb on + strand, within Sama_0765at 948.504 kb on + strand, within Sama_0765at 948.504 kb on + strand, within Sama_0765at 948.504 kb on + strand, within Sama_0765at 948.505 kb on - strand, within Sama_0765at 948.578 kb on - strand, within Sama_0765at 948.584 kb on + strand, within Sama_0765at 948.627 kb on - strand, within Sama_0765at 948.674 kb on + strand, within Sama_0765at 948.674 kb on + strand, within Sama_0765at 948.675 kb on - strand, within Sama_0765at 948.675 kb on - strand, within Sama_0765at 948.675 kb on - strand, within Sama_0765at 948.709 kb on - strand, within Sama_0765at 948.728 kb on + strand, within Sama_0765at 948.729 kb on - strand, within Sama_0765at 948.760 kb on + strand, within Sama_0765at 948.760 kb on + strand, within Sama_0765at 948.761 kb on - strand, within Sama_0765at 948.782 kb on + strand, within Sama_0765at 948.782 kb on + strand, within Sama_0765at 948.783 kb on - strand, within Sama_0765at 948.783 kb on - strand, within Sama_0765at 948.837 kb on + strand, within Sama_0765at 949.011 kb on + strandat 949.011 kb on + strandat 949.021 kb on - strandat 949.028 kb on + strandat 949.169 kb on + strand, within Sama_0766at 949.169 kb on + strand, within Sama_0766at 949.169 kb on + strand, within Sama_0766at 949.170 kb on - strand, within Sama_0766at 949.170 kb on - strand, within Sama_0766at 949.170 kb on - strand, within Sama_0766at 949.229 kb on - strand, within Sama_0766at 949.235 kb on + strand, within Sama_0766at 949.235 kb on + strand, within Sama_0766at 949.236 kb on - strand, within Sama_0766at 949.316 kb on + strand, within Sama_0766at 949.316 kb on + strand, within Sama_0766at 949.316 kb on + strand, within Sama_0766at 949.317 kb on - strand, within Sama_0766at 949.412 kb on + strand, within Sama_0766at 949.412 kb on + strand, within Sama_0766at 949.413 kb on - strand, within Sama_0766at 949.434 kb on + strand, within Sama_0766at 949.434 kb on + strand, within Sama_0766at 949.434 kb on + strand, within Sama_0766at 949.434 kb on + strand, within Sama_0766at 949.434 kb on + strand, within Sama_0766at 949.434 kb on + strand, within Sama_0766at 949.434 kb on + strand, within Sama_0766at 949.434 kb on + strand, within Sama_0766at 949.434 kb on + strand, within Sama_0766at 949.434 kb on + strand, within Sama_0766at 949.434 kb on + strand, within Sama_0766at 949.435 kb on - strand, within Sama_0766at 949.435 kb on - strand, within Sama_0766at 949.435 kb on - strand, within Sama_0766at 949.435 kb on - strand, within Sama_0766at 949.435 kb on - strand, within Sama_0766at 949.435 kb on - strand, within Sama_0766at 949.435 kb on - strand, within Sama_0766at 949.435 kb on - strand, within Sama_0766at 949.435 kb on - strand, within Sama_0766at 949.435 kb on - strand, within Sama_0766at 949.435 kb on - strand, within Sama_0766at 949.435 kb on - strand, within Sama_0766at 949.435 kb on - strand, within Sama_0766at 949.435 kb on - strand, within Sama_0766at 949.435 kb on - strand, within Sama_0766at 949.436 kb on + strand, within Sama_0766at 949.436 kb on + strand, within Sama_0766at 949.436 kb on + strand, within Sama_0766at 949.436 kb on + strand, within Sama_0766at 949.436 kb on + strand, within Sama_0766at 949.436 kb on + strand, within Sama_0766at 949.437 kb on - strand, within Sama_0766at 949.437 kb on - strand, within Sama_0766at 949.437 kb on - strand, within Sama_0766at 949.437 kb on - strand, within Sama_0766at 949.437 kb on - strand, within Sama_0766at 949.446 kb on + strand, within Sama_0766at 949.446 kb on + strand, within Sama_0766at 949.446 kb on + strand, within Sama_0766at 949.446 kb on + strand, within Sama_0766at 949.447 kb on - strand, within Sama_0766at 949.447 kb on - strand, within Sama_0766at 949.447 kb on - strand, within Sama_0766at 949.447 kb on - strand, within Sama_0766at 949.447 kb on - strand, within Sama_0766at 949.452 kb on + strand, within Sama_0766at 949.474 kb on + strand, within Sama_0766at 949.474 kb on + strand, within Sama_0766at 949.474 kb on + strand, within Sama_0766at 949.526 kb on + strand, within Sama_0766at 949.527 kb on - strand, within Sama_0766at 949.606 kb on + strandat 949.607 kb on - strandat 949.607 kb on - strandat 949.629 kb on + strandat 949.693 kb on + strandat 949.693 kb on + strandat 949.693 kb on + strandat 949.702 kb on + strandat 949.702 kb on + strandat 949.819 kb on - strandat 949.828 kb on - strandat 949.828 kb on - strandat 949.828 kb on - strandat 949.828 kb on - strandat 949.828 kb on - strandat 949.945 kb on + strandat 949.945 kb on + strandat 949.948 kb on + strandat 949.948 kb on + strandat 949.948 kb on + strandat 949.948 kb on + strandat 949.949 kb on - strandat 949.949 kb on - strandat 949.949 kb on - strandat 949.949 kb on - strandat 949.949 kb on - strandat 949.949 kb on - strandat 949.975 kb on - strandat 949.975 kb on - strandat 949.975 kb on - strandat 949.980 kb on + strandat 950.110 kb on + strandat 950.110 kb on + strandat 950.111 kb on - strandat 950.111 kb on - strandat 950.134 kb on - strandat 950.134 kb on - strandat 950.204 kb on + strandat 950.250 kb on + strandat 950.250 kb on + strandat 950.250 kb on + strandat 950.251 kb on - strandat 950.300 kb on + strandat 950.301 kb on - strandat 950.340 kb on + strandat 950.345 kb on + strandat 950.345 kb on + strandat 950.346 kb on - strandat 950.438 kb on - strand, within Sama_0767at 950.464 kb on + strand, within Sama_0767at 950.464 kb on + strand, within Sama_0767at 950.464 kb on + strand, within Sama_0767at 950.464 kb on + strand, within Sama_0767at 950.464 kb on + strand, within Sama_0767at 950.465 kb on - strand, within Sama_0767at 950.465 kb on - strand, within Sama_0767at 950.502 kb on + strand, within Sama_0767at 950.502 kb on + strand, within Sama_0767at 950.506 kb on + strand, within Sama_0767at 950.506 kb on + strand, within Sama_0767at 950.507 kb on - strand, within Sama_0767at 950.507 kb on - strand, within Sama_0767at 950.581 kb on + strand, within Sama_0767at 950.624 kb on - strand, within Sama_0767

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate
remove
948,035 - Sama_0765 0.35 +1.0
948,035 - Sama_0765 0.35 -2.4
948,089 + Sama_0765 0.39 -2.0
948,125 + Sama_0765 0.41 +1.1
948,125 + Sama_0765 0.41 +0.6
948,125 + Sama_0765 0.41 +0.4
948,125 + Sama_0765 0.41 -0.9
948,125 + Sama_0765 0.41 -2.4
948,198 + Sama_0765 0.46 -1.9
948,202 + Sama_0765 0.46 -0.6
948,202 + Sama_0765 0.46 -0.2
948,202 + Sama_0765 0.46 +0.3
948,202 + Sama_0765 0.46 -0.0
948,202 + Sama_0765 0.46 -1.9
948,202 + Sama_0765 0.46 -1.8
948,202 + Sama_0765 0.46 +1.3
948,202 + Sama_0765 0.46 -0.0
948,203 - Sama_0765 0.46 +0.5
948,203 - Sama_0765 0.46 -0.2
948,203 - Sama_0765 0.46 -0.4
948,203 - Sama_0765 0.46 +0.1
948,203 - Sama_0765 0.46 -2.0
948,206 + Sama_0765 0.46 -0.2
948,206 + Sama_0765 0.46 -0.4
948,206 + Sama_0765 0.46 -0.1
948,206 + Sama_0765 0.46 +0.0
948,207 - Sama_0765 0.47 -0.2
948,207 - Sama_0765 0.47 +1.1
948,243 + Sama_0765 0.49 +0.1
948,297 + Sama_0765 0.52 -0.4
948,363 + Sama_0765 0.57 +0.9
948,364 - Sama_0765 0.57 -0.4
948,371 + Sama_0765 0.57 -0.4
948,418 + Sama_0765 0.61 +0.6
948,504 + Sama_0765 0.66 +0.1
948,504 + Sama_0765 0.66 +0.4
948,504 + Sama_0765 0.66 -1.4
948,505 - Sama_0765 0.66 -2.0
948,578 - Sama_0765 0.71 +0.9
948,584 + Sama_0765 0.72 -0.4
948,627 - Sama_0765 0.74 -0.4
948,674 + Sama_0765 0.77 -1.2
948,674 + Sama_0765 0.77 +0.6
948,675 - Sama_0765 0.78 -0.1
948,675 - Sama_0765 0.78 +0.4
948,675 - Sama_0765 0.78 +0.8
948,709 - Sama_0765 0.80 -0.6
948,728 + Sama_0765 0.81 +0.1
948,729 - Sama_0765 0.81 -1.2
948,760 + Sama_0765 0.83 +0.3
948,760 + Sama_0765 0.83 +0.9
948,761 - Sama_0765 0.83 -0.8
948,782 + Sama_0765 0.85 -0.4
948,782 + Sama_0765 0.85 -2.0
948,783 - Sama_0765 0.85 -1.4
948,783 - Sama_0765 0.85 -0.4
948,837 + Sama_0765 0.88 +0.2
949,011 + +0.7
949,011 + +0.1
949,021 - +0.9
949,028 + -1.4
949,169 + Sama_0766 0.22 -1.4
949,169 + Sama_0766 0.22 -2.0
949,169 + Sama_0766 0.22 -3.2
949,170 - Sama_0766 0.23 -2.8
949,170 - Sama_0766 0.23 -1.4
949,170 - Sama_0766 0.23 -1.4
949,229 - Sama_0766 0.32 -1.4
949,235 + Sama_0766 0.33 -2.8
949,235 + Sama_0766 0.33 -3.4
949,236 - Sama_0766 0.34 -2.0
949,316 + Sama_0766 0.47 -0.4
949,316 + Sama_0766 0.47 -2.8
949,316 + Sama_0766 0.47 -0.8
949,317 - Sama_0766 0.47 -1.4
949,412 + Sama_0766 0.63 -2.0
949,412 + Sama_0766 0.63 -2.8
949,413 - Sama_0766 0.63 -1.4
949,434 + Sama_0766 0.67 -2.8
949,434 + Sama_0766 0.67 -2.8
949,434 + Sama_0766 0.67 -1.4
949,434 + Sama_0766 0.67 -0.4
949,434 + Sama_0766 0.67 -2.4
949,434 + Sama_0766 0.67 -0.0
949,434 + Sama_0766 0.67 -3.6
949,434 + Sama_0766 0.67 -2.2
949,434 + Sama_0766 0.67 -0.4
949,434 + Sama_0766 0.67 -1.4
949,434 + Sama_0766 0.67 -2.0
949,435 - Sama_0766 0.67 -3.2
949,435 - Sama_0766 0.67 -3.3
949,435 - Sama_0766 0.67 -2.0
949,435 - Sama_0766 0.67 -2.4
949,435 - Sama_0766 0.67 -1.4
949,435 - Sama_0766 0.67 -1.2
949,435 - Sama_0766 0.67 -2.4
949,435 - Sama_0766 0.67 -1.4
949,435 - Sama_0766 0.67 -2.4
949,435 - Sama_0766 0.67 -0.4
949,435 - Sama_0766 0.67 -2.4
949,435 - Sama_0766 0.67 -1.4
949,435 - Sama_0766 0.67 -5.0
949,435 - Sama_0766 0.67 -3.0
949,435 - Sama_0766 0.67 -2.4
949,436 + Sama_0766 0.67 -1.4
949,436 + Sama_0766 0.67 -1.4
949,436 + Sama_0766 0.67 -0.4
949,436 + Sama_0766 0.67 -0.4
949,436 + Sama_0766 0.67 -0.4
949,436 + Sama_0766 0.67 -3.4
949,437 - Sama_0766 0.67 -2.0
949,437 - Sama_0766 0.67 -3.0
949,437 - Sama_0766 0.67 -3.6
949,437 - Sama_0766 0.67 -1.4
949,437 - Sama_0766 0.67 -3.0
949,446 + Sama_0766 0.69 -3.6
949,446 + Sama_0766 0.69 -2.4
949,446 + Sama_0766 0.69 -2.4
949,446 + Sama_0766 0.69 -0.4
949,447 - Sama_0766 0.69 -1.4
949,447 - Sama_0766 0.69 -4.1
949,447 - Sama_0766 0.69 -2.4
949,447 - Sama_0766 0.69 -1.4
949,447 - Sama_0766 0.69 -3.6
949,452 + Sama_0766 0.69 -3.9
949,474 + Sama_0766 0.73 -1.4
949,474 + Sama_0766 0.73 -3.6
949,474 + Sama_0766 0.73 -2.8
949,526 + Sama_0766 0.82 -3.5
949,527 - Sama_0766 0.82 -3.6
949,606 + -4.0
949,607 - -1.4
949,607 - -2.5
949,629 + -2.8
949,693 + +0.4
949,693 + +1.2
949,693 + +0.9
949,702 + +0.4
949,702 + -0.4
949,819 - -1.4
949,828 - -0.2
949,828 - -2.0
949,828 - +0.2
949,828 - +0.8
949,828 - +0.0
949,945 + +0.1
949,945 + +0.3
949,948 + -0.2
949,948 + +2.6
949,948 + +0.9
949,948 + +0.6
949,949 - -0.1
949,949 - +1.2
949,949 - +0.6
949,949 - +1.9
949,949 - -0.8
949,949 - -1.2
949,975 - -2.4
949,975 - -0.4
949,975 - +0.4
949,980 + -0.5
950,110 + +0.2
950,110 + -0.2
950,111 - -0.3
950,111 - +0.5
950,134 - +1.2
950,134 - -1.4
950,204 + +0.1
950,250 + +1.6
950,250 + -0.4
950,250 + -0.3
950,251 - +0.6
950,300 + -0.2
950,301 - +0.5
950,340 + +0.6
950,345 + -0.4
950,345 + -1.1
950,346 - +0.7
950,438 - Sama_0767 0.11 +0.9
950,464 + Sama_0767 0.13 -0.1
950,464 + Sama_0767 0.13 +2.1
950,464 + Sama_0767 0.13 +0.8
950,464 + Sama_0767 0.13 +0.1
950,464 + Sama_0767 0.13 +0.8
950,465 - Sama_0767 0.13 -0.6
950,465 - Sama_0767 0.13 -0.2
950,502 + Sama_0767 0.15 -0.4
950,502 + Sama_0767 0.15 -0.4
950,506 + Sama_0767 0.16 -1.0
950,506 + Sama_0767 0.16 -1.4
950,507 - Sama_0767 0.16 +0.6
950,507 - Sama_0767 0.16 +0.5
950,581 + Sama_0767 0.20 -2.0
950,624 - Sama_0767 0.23 +0.1

Or see this region's nucleotide sequence