Strain Fitness in Marinobacter adhaerens HP15 around HP15_2737

Experiment: L-Leucine as (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2735 and HP15_2736 are separated by 48 nucleotidesHP15_2736 and HP15_2737 are separated by 187 nucleotidesHP15_2737 and HP15_2738 are separated by 10 nucleotidesHP15_2738 and HP15_2739 are separated by 13 nucleotides HP15_2735: HP15_2735 - diguanylate cyclase with PAS/PAC sensor, at 2,888,601 to 2,889,539 _2735 HP15_2736: HP15_2736 - pseudoazurin, at 2,889,588 to 2,890,037 _2736 HP15_2737: HP15_2737 - Coq7 family protein, at 2,890,225 to 2,890,803 _2737 HP15_2738: HP15_2738 - hypothetical protein, at 2,890,814 to 2,891,332 _2738 HP15_2739: HP15_2739 - DNA-3-methyladenine glycosidase II, at 2,891,346 to 2,891,975 _2739 Position (kb) 2890 2891Strain fitness (log2 ratio) -1 0 1 2at 2889.416 kb on - strand, within HP15_2735at 2889.714 kb on + strand, within HP15_2736at 2889.720 kb on + strand, within HP15_2736at 2889.752 kb on + strand, within HP15_2736at 2889.752 kb on + strand, within HP15_2736at 2889.773 kb on + strand, within HP15_2736at 2889.812 kb on - strand, within HP15_2736at 2889.820 kb on - strand, within HP15_2736at 2889.822 kb on + strand, within HP15_2736at 2889.830 kb on + strand, within HP15_2736at 2889.844 kb on + strand, within HP15_2736at 2889.846 kb on + strand, within HP15_2736at 2889.846 kb on + strand, within HP15_2736at 2889.854 kb on - strand, within HP15_2736at 2890.006 kb on + strandat 2890.077 kb on + strandat 2890.096 kb on + strandat 2890.120 kb on + strandat 2890.250 kb on - strandat 2890.264 kb on - strandat 2890.332 kb on - strand, within HP15_2737at 2890.436 kb on + strand, within HP15_2737at 2890.444 kb on - strand, within HP15_2737at 2890.444 kb on - strand, within HP15_2737at 2890.562 kb on - strand, within HP15_2737at 2890.597 kb on - strand, within HP15_2737at 2890.662 kb on - strand, within HP15_2737at 2890.664 kb on - strand, within HP15_2737at 2890.731 kb on + strand, within HP15_2737at 2890.943 kb on + strand, within HP15_2738at 2890.943 kb on + strand, within HP15_2738at 2891.059 kb on - strand, within HP15_2738at 2891.116 kb on - strand, within HP15_2738at 2891.145 kb on - strand, within HP15_2738at 2891.145 kb on - strand, within HP15_2738at 2891.177 kb on - strand, within HP15_2738at 2891.218 kb on - strand, within HP15_2738at 2891.234 kb on + strand, within HP15_2738at 2891.234 kb on + strand, within HP15_2738at 2891.234 kb on + strand, within HP15_2738at 2891.407 kb on - strandat 2891.620 kb on + strand, within HP15_2739at 2891.687 kb on - strand, within HP15_2739at 2891.756 kb on + strand, within HP15_2739at 2891.787 kb on + strand, within HP15_2739at 2891.787 kb on + strand, within HP15_2739

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine as (N)
remove
2,889,416 - HP15_2735 0.87 -0.8
2,889,714 + HP15_2736 0.28 +0.1
2,889,720 + HP15_2736 0.29 +0.8
2,889,752 + HP15_2736 0.36 -0.1
2,889,752 + HP15_2736 0.36 -0.1
2,889,773 + HP15_2736 0.41 -0.1
2,889,812 - HP15_2736 0.50 +0.4
2,889,820 - HP15_2736 0.52 +1.2
2,889,822 + HP15_2736 0.52 -0.6
2,889,830 + HP15_2736 0.54 +1.0
2,889,844 + HP15_2736 0.57 -0.8
2,889,846 + HP15_2736 0.57 +1.1
2,889,846 + HP15_2736 0.57 -0.4
2,889,854 - HP15_2736 0.59 +0.7
2,890,006 + -0.3
2,890,077 + -0.2
2,890,096 + -0.1
2,890,120 + -0.3
2,890,250 - +2.0
2,890,264 - -1.0
2,890,332 - HP15_2737 0.18 -0.4
2,890,436 + HP15_2737 0.36 +0.8
2,890,444 - HP15_2737 0.38 +0.9
2,890,444 - HP15_2737 0.38 +0.3
2,890,562 - HP15_2737 0.58 +0.8
2,890,597 - HP15_2737 0.64 +0.7
2,890,662 - HP15_2737 0.75 +0.1
2,890,664 - HP15_2737 0.76 +2.0
2,890,731 + HP15_2737 0.87 -0.2
2,890,943 + HP15_2738 0.25 -0.4
2,890,943 + HP15_2738 0.25 -0.7
2,891,059 - HP15_2738 0.47 +0.2
2,891,116 - HP15_2738 0.58 -0.5
2,891,145 - HP15_2738 0.64 -0.6
2,891,145 - HP15_2738 0.64 -0.5
2,891,177 - HP15_2738 0.70 +1.3
2,891,218 - HP15_2738 0.78 -0.9
2,891,234 + HP15_2738 0.81 +1.8
2,891,234 + HP15_2738 0.81 +1.0
2,891,234 + HP15_2738 0.81 -0.4
2,891,407 - +0.5
2,891,620 + HP15_2739 0.43 +0.2
2,891,687 - HP15_2739 0.54 +0.4
2,891,756 + HP15_2739 0.65 +1.1
2,891,787 + HP15_2739 0.70 +0.6
2,891,787 + HP15_2739 0.70 +1.2

Or see this region's nucleotide sequence