Experiment: L-Leucine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1907 and HP15_1908 are separated by 6 nucleotides HP15_1908 and HP15_1909 are separated by 3 nucleotides
HP15_1907: HP15_1907 - coenzyme F390 synthetase-like protein, at 2,017,789 to 2,019,153
_1907
HP15_1908: HP15_1908 - glycosyl transferase, family 2, at 2,019,160 to 2,020,089
_1908
HP15_1909: HP15_1909 - fibronectin, type III domain protein-like protein, at 2,020,093 to 2,021,283
_1909
Position (kb)
2019
2020
2021 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2018.191 kb on + strand, within HP15_1907 at 2018.191 kb on + strand, within HP15_1907 at 2018.191 kb on + strand, within HP15_1907 at 2018.196 kb on + strand, within HP15_1907 at 2018.196 kb on + strand, within HP15_1907 at 2018.340 kb on + strand, within HP15_1907 at 2018.835 kb on + strand, within HP15_1907 at 2019.058 kb on + strand at 2019.142 kb on + strand at 2019.315 kb on + strand, within HP15_1908 at 2019.364 kb on + strand, within HP15_1908 at 2019.372 kb on - strand, within HP15_1908 at 2019.489 kb on + strand, within HP15_1908 at 2019.582 kb on + strand, within HP15_1908 at 2019.582 kb on + strand, within HP15_1908 at 2019.593 kb on + strand, within HP15_1908 at 2019.685 kb on - strand, within HP15_1908 at 2019.729 kb on - strand, within HP15_1908 at 2019.827 kb on - strand, within HP15_1908 at 2019.864 kb on + strand, within HP15_1908 at 2019.907 kb on - strand, within HP15_1908 at 2019.990 kb on - strand, within HP15_1908 at 2020.117 kb on - strand at 2020.828 kb on - strand, within HP15_1909 at 2021.037 kb on + strand, within HP15_1909
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine as (N) remove 2,018,191 + HP15_1907 0.29 +0.2 2,018,191 + HP15_1907 0.29 +0.6 2,018,191 + HP15_1907 0.29 +0.1 2,018,196 + HP15_1907 0.30 -3.2 2,018,196 + HP15_1907 0.30 -1.7 2,018,340 + HP15_1907 0.40 -1.0 2,018,835 + HP15_1907 0.77 -1.1 2,019,058 + -2.0 2,019,142 + -0.6 2,019,315 + HP15_1908 0.17 +1.4 2,019,364 + HP15_1908 0.22 +1.2 2,019,372 - HP15_1908 0.23 -0.7 2,019,489 + HP15_1908 0.35 -0.2 2,019,582 + HP15_1908 0.45 -1.1 2,019,582 + HP15_1908 0.45 +0.4 2,019,593 + HP15_1908 0.47 +0.9 2,019,685 - HP15_1908 0.56 -0.4 2,019,729 - HP15_1908 0.61 +1.4 2,019,827 - HP15_1908 0.72 +1.8 2,019,864 + HP15_1908 0.76 +1.3 2,019,907 - HP15_1908 0.80 +0.2 2,019,990 - HP15_1908 0.89 +1.0 2,020,117 - +0.4 2,020,828 - HP15_1909 0.62 -1.7 2,021,037 + HP15_1909 0.79 -1.4
Or see this region's nucleotide sequence