Experiment: L-Leucine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1738 and HP15_1739 are separated by 38 nucleotides HP15_1739 and HP15_1740 are separated by 53 nucleotides HP15_1740 and HP15_1741 are separated by 38 nucleotides HP15_1741 and HP15_1742 are separated by 245 nucleotides
HP15_1738: HP15_1738 - hypothetical protein, at 1,836,277 to 1,836,408
_1738
HP15_1739: HP15_1739 - membrane protein containing DUF6, transmembrane, at 1,836,447 to 1,837,325
_1739
HP15_1740: HP15_1740 - enoyl-CoA hydratase/isomerase, at 1,837,379 to 1,838,182
_1740
HP15_1741: HP15_1741 - hypothetical protein, at 1,838,221 to 1,838,583
_1741
HP15_1742: HP15_1742 - secreted protein, at 1,838,829 to 1,839,464
_1742
Position (kb)
1837
1838
1839 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1836.399 kb on - strand at 1836.419 kb on + strand at 1836.422 kb on - strand at 1836.478 kb on + strand at 1836.606 kb on + strand, within HP15_1739 at 1836.657 kb on + strand, within HP15_1739 at 1836.665 kb on - strand, within HP15_1739 at 1836.665 kb on - strand, within HP15_1739 at 1836.677 kb on - strand, within HP15_1739 at 1836.818 kb on - strand, within HP15_1739 at 1836.836 kb on - strand, within HP15_1739 at 1836.896 kb on - strand, within HP15_1739 at 1836.938 kb on + strand, within HP15_1739 at 1836.981 kb on + strand, within HP15_1739 at 1837.025 kb on + strand, within HP15_1739 at 1837.033 kb on - strand, within HP15_1739 at 1837.033 kb on - strand, within HP15_1739 at 1837.033 kb on - strand, within HP15_1739 at 1837.033 kb on - strand, within HP15_1739 at 1837.084 kb on - strand, within HP15_1739 at 1837.084 kb on - strand, within HP15_1739 at 1837.333 kb on - strand at 1837.442 kb on + strand at 1837.487 kb on - strand, within HP15_1740 at 1837.487 kb on - strand, within HP15_1740 at 1837.518 kb on + strand, within HP15_1740 at 1837.781 kb on + strand, within HP15_1740 at 1837.789 kb on - strand, within HP15_1740 at 1837.789 kb on - strand, within HP15_1740 at 1837.819 kb on + strand, within HP15_1740 at 1837.820 kb on - strand, within HP15_1740 at 1837.890 kb on + strand, within HP15_1740 at 1837.954 kb on - strand, within HP15_1740 at 1838.075 kb on - strand, within HP15_1740 at 1838.075 kb on - strand, within HP15_1740 at 1838.112 kb on - strand at 1838.127 kb on + strand at 1838.135 kb on - strand at 1838.368 kb on - strand, within HP15_1741 at 1838.450 kb on - strand, within HP15_1741 at 1838.614 kb on + strand at 1838.617 kb on - strand at 1838.642 kb on - strand at 1838.658 kb on + strand at 1838.790 kb on + strand at 1838.940 kb on - strand, within HP15_1742 at 1838.940 kb on - strand, within HP15_1742
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine as (N) remove 1,836,399 - -0.3 1,836,419 + +1.5 1,836,422 - +1.0 1,836,478 + +1.3 1,836,606 + HP15_1739 0.18 -0.9 1,836,657 + HP15_1739 0.24 +1.2 1,836,665 - HP15_1739 0.25 +0.8 1,836,665 - HP15_1739 0.25 +1.2 1,836,677 - HP15_1739 0.26 +1.8 1,836,818 - HP15_1739 0.42 -0.0 1,836,836 - HP15_1739 0.44 +0.2 1,836,896 - HP15_1739 0.51 +0.6 1,836,938 + HP15_1739 0.56 -1.0 1,836,981 + HP15_1739 0.61 +0.9 1,837,025 + HP15_1739 0.66 +1.1 1,837,033 - HP15_1739 0.67 +0.6 1,837,033 - HP15_1739 0.67 +0.8 1,837,033 - HP15_1739 0.67 -0.9 1,837,033 - HP15_1739 0.67 -0.8 1,837,084 - HP15_1739 0.72 +0.1 1,837,084 - HP15_1739 0.72 -0.2 1,837,333 - -0.2 1,837,442 + -0.2 1,837,487 - HP15_1740 0.13 +0.1 1,837,487 - HP15_1740 0.13 -1.8 1,837,518 + HP15_1740 0.17 +1.1 1,837,781 + HP15_1740 0.50 +0.5 1,837,789 - HP15_1740 0.51 +1.1 1,837,789 - HP15_1740 0.51 -0.2 1,837,819 + HP15_1740 0.55 +2.6 1,837,820 - HP15_1740 0.55 -0.2 1,837,890 + HP15_1740 0.64 -0.4 1,837,954 - HP15_1740 0.72 +0.1 1,838,075 - HP15_1740 0.87 +0.1 1,838,075 - HP15_1740 0.87 +0.7 1,838,112 - +2.9 1,838,127 + +0.7 1,838,135 - +1.3 1,838,368 - HP15_1741 0.40 +1.4 1,838,450 - HP15_1741 0.63 +1.5 1,838,614 + +1.0 1,838,617 - -0.8 1,838,642 - -0.2 1,838,658 + +1.2 1,838,790 + +1.0 1,838,940 - HP15_1742 0.17 -0.4 1,838,940 - HP15_1742 0.17 +0.6
Or see this region's nucleotide sequence