Strain Fitness in Marinobacter adhaerens HP15 around HP15_1188

Experiment: L-Leucine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1186 and HP15_1187 are separated by 277 nucleotidesHP15_1187 and HP15_1188 overlap by 4 nucleotidesHP15_1188 and HP15_1189 are separated by 21 nucleotidesHP15_1189 and HP15_1190 are separated by 286 nucleotides HP15_1186: HP15_1186 - DNA topoisomerase III, at 1,219,670 to 1,221,853 _1186 HP15_1187: HP15_1187 - BolA-like protein, at 1,222,131 to 1,222,487 _1187 HP15_1188: HP15_1188 - Sua5/YciO/YrdC/YwlC family protein, at 1,222,484 to 1,223,107 _1188 HP15_1189: HP15_1189 - conserved hypothetical protein, at 1,223,129 to 1,223,794 _1189 HP15_1190: HP15_1190 - methyl-accepting chemotaxis sensory transducer, at 1,224,081 to 1,225,706 _1190 Position (kb) 1222 1223 1224Strain fitness (log2 ratio) -3 -2 -1 0 1at 1221.547 kb on + strand, within HP15_1186at 1221.594 kb on - strand, within HP15_1186at 1221.598 kb on + strand, within HP15_1186at 1221.678 kb on + strandat 1221.678 kb on + strandat 1221.784 kb on + strandat 1221.789 kb on + strandat 1221.807 kb on - strandat 1221.857 kb on + strandat 1221.922 kb on - strandat 1221.933 kb on + strandat 1221.950 kb on - strandat 1222.013 kb on + strandat 1222.108 kb on - strandat 1222.113 kb on - strandat 1222.171 kb on - strand, within HP15_1187at 1222.179 kb on - strand, within HP15_1187at 1222.553 kb on - strand, within HP15_1188at 1222.553 kb on - strand, within HP15_1188at 1222.586 kb on + strand, within HP15_1188at 1222.689 kb on + strand, within HP15_1188at 1222.734 kb on - strand, within HP15_1188at 1222.876 kb on - strand, within HP15_1188at 1222.876 kb on - strand, within HP15_1188at 1222.895 kb on - strand, within HP15_1188at 1222.971 kb on + strand, within HP15_1188at 1223.024 kb on - strand, within HP15_1188at 1223.041 kb on - strand, within HP15_1188at 1223.154 kb on - strandat 1223.216 kb on + strand, within HP15_1189at 1223.225 kb on - strand, within HP15_1189at 1223.275 kb on - strand, within HP15_1189at 1223.284 kb on - strand, within HP15_1189at 1223.306 kb on - strand, within HP15_1189at 1223.331 kb on + strand, within HP15_1189at 1223.350 kb on + strand, within HP15_1189at 1223.546 kb on + strand, within HP15_1189at 1223.546 kb on + strand, within HP15_1189at 1223.588 kb on - strand, within HP15_1189at 1223.638 kb on - strand, within HP15_1189at 1223.645 kb on - strand, within HP15_1189at 1223.645 kb on - strand, within HP15_1189at 1223.788 kb on - strandat 1223.912 kb on - strandat 1223.916 kb on + strandat 1223.918 kb on - strandat 1223.957 kb on + strandat 1224.037 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine as (N)
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1,221,547 + HP15_1186 0.86 -0.2
1,221,594 - HP15_1186 0.88 +0.3
1,221,598 + HP15_1186 0.88 +0.8
1,221,678 + +0.5
1,221,678 + -0.2
1,221,784 + +0.6
1,221,789 + +0.3
1,221,807 - -0.3
1,221,857 + +0.0
1,221,922 - +0.8
1,221,933 + +0.7
1,221,950 - -1.1
1,222,013 + +0.1
1,222,108 - +0.2
1,222,113 - +0.6
1,222,171 - HP15_1187 0.11 +0.1
1,222,179 - HP15_1187 0.13 -0.4
1,222,553 - HP15_1188 0.11 +0.5
1,222,553 - HP15_1188 0.11 -0.5
1,222,586 + HP15_1188 0.16 -1.3
1,222,689 + HP15_1188 0.33 -0.8
1,222,734 - HP15_1188 0.40 -1.0
1,222,876 - HP15_1188 0.63 -1.3
1,222,876 - HP15_1188 0.63 -0.2
1,222,895 - HP15_1188 0.66 -3.7
1,222,971 + HP15_1188 0.78 +0.2
1,223,024 - HP15_1188 0.87 +0.9
1,223,041 - HP15_1188 0.89 -1.1
1,223,154 - -0.3
1,223,216 + HP15_1189 0.13 +0.0
1,223,225 - HP15_1189 0.14 -1.0
1,223,275 - HP15_1189 0.22 -0.2
1,223,284 - HP15_1189 0.23 +0.6
1,223,306 - HP15_1189 0.27 +1.1
1,223,331 + HP15_1189 0.30 +0.6
1,223,350 + HP15_1189 0.33 -0.0
1,223,546 + HP15_1189 0.63 +1.0
1,223,546 + HP15_1189 0.63 -0.2
1,223,588 - HP15_1189 0.69 -0.2
1,223,638 - HP15_1189 0.76 -1.6
1,223,645 - HP15_1189 0.77 +0.7
1,223,645 - HP15_1189 0.77 +0.7
1,223,788 - -0.5
1,223,912 - -0.1
1,223,916 + -0.5
1,223,918 - -0.5
1,223,957 + -2.0
1,224,037 - -0.7

Or see this region's nucleotide sequence