Experiment: LB, microplate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_2606 and Sama_R0113 are separated by 302 nucleotides Sama_R0113 and Sama_R0114 are separated by 52 nucleotides Sama_R0114 and Sama_R0115 are separated by 37 nucleotides Sama_R0115 and Sama_R0116 are separated by 30 nucleotides Sama_R0116 and Sama_2607 are separated by 151 nucleotides
Sama_2606: Sama_2606 - putative lipoprotein (RefSeq), at 3,119,410 to 3,120,261
_2606
Sama_R0113: Sama_R0113 - tRNA-Phe (RefSeq), at 3,120,564 to 3,120,639
_R0113
Sama_R0114: Sama_R0114 - tRNA-Leu (RefSeq), at 3,120,692 to 3,120,778
_R0114
Sama_R0115: Sama_R0115 - tRNA-Leu (RefSeq), at 3,120,816 to 3,120,902
_R0115
Sama_R0116: Sama_R0116 - tRNA-Leu (RefSeq), at 3,120,933 to 3,121,019
_R0116
Sama_2607: Sama_2607 - putative methyl-accepting chemotaxis sensory transducer (RefSeq), at 3,121,171 to 3,122,796
_2607
Position (kb) 3120
3121 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 3120.259 kb on + strand at 3120.279 kb on + strand at 3120.292 kb on + strand at 3120.292 kb on + strand at 3120.293 kb on - strand at 3120.320 kb on - strand at 3120.358 kb on + strand at 3120.358 kb on + strand at 3120.359 kb on - strand at 3120.359 kb on - strand at 3120.381 kb on - strand at 3120.381 kb on - strand at 3120.381 kb on - strand at 3120.382 kb on + strand at 3120.382 kb on + strand at 3120.383 kb on - strand at 3120.406 kb on + strand at 3120.406 kb on + strand at 3120.407 kb on - strand at 3120.407 kb on - strand at 3120.407 kb on - strand at 3120.427 kb on + strand at 3120.428 kb on - strand at 3120.428 kb on - strand at 3120.790 kb on + strand at 3120.790 kb on + strand at 3120.790 kb on + strand at 3120.790 kb on + strand at 3120.790 kb on + strand at 3120.790 kb on + strand at 3120.790 kb on + strand at 3120.794 kb on + strand at 3120.794 kb on + strand at 3120.794 kb on + strand at 3120.794 kb on + strand at 3120.794 kb on + strand at 3120.794 kb on + strand at 3120.800 kb on + strand at 3120.800 kb on + strand at 3120.905 kb on + strand at 3120.905 kb on + strand at 3120.921 kb on + strand at 3120.927 kb on + strand at 3120.927 kb on + strand at 3120.927 kb on + strand at 3120.983 kb on + strand, within Sama_R0116 at 3120.983 kb on + strand, within Sama_R0116 at 3121.015 kb on + strand at 3121.026 kb on + strand at 3121.026 kb on + strand at 3121.026 kb on + strand at 3121.059 kb on + strand at 3121.059 kb on + strand at 3121.060 kb on - strand at 3121.060 kb on - strand at 3121.062 kb on + strand at 3121.091 kb on + strand at 3121.091 kb on + strand at 3121.092 kb on - strand at 3121.093 kb on + strand at 3121.093 kb on + strand at 3121.093 kb on + strand at 3121.093 kb on + strand at 3121.094 kb on - strand at 3121.094 kb on - strand at 3121.094 kb on - strand at 3121.097 kb on + strand at 3121.097 kb on + strand at 3121.097 kb on + strand at 3121.097 kb on + strand at 3121.097 kb on + strand at 3121.097 kb on + strand at 3121.097 kb on + strand at 3121.097 kb on + strand at 3121.097 kb on + strand at 3121.097 kb on + strand at 3121.097 kb on + strand at 3121.097 kb on + strand at 3121.097 kb on + strand at 3121.098 kb on - strand at 3121.098 kb on - strand at 3121.098 kb on - strand at 3121.098 kb on - strand at 3121.098 kb on - strand at 3121.098 kb on - strand at 3121.098 kb on - strand at 3121.098 kb on - strand at 3121.099 kb on + strand at 3121.099 kb on + strand at 3121.099 kb on + strand at 3121.099 kb on + strand at 3121.099 kb on + strand at 3121.099 kb on + strand at 3121.100 kb on - strand at 3121.100 kb on - strand at 3121.100 kb on - strand at 3121.100 kb on - strand at 3121.100 kb on - strand at 3121.100 kb on - strand at 3121.103 kb on + strand at 3121.103 kb on + strand at 3121.104 kb on - strand at 3121.104 kb on - strand at 3121.260 kb on + strand at 3121.260 kb on + strand at 3121.260 kb on + strand at 3121.261 kb on - strand at 3121.261 kb on - strand at 3121.261 kb on - strand at 3121.261 kb on - strand at 3121.274 kb on + strand at 3121.274 kb on + strand at 3121.274 kb on + strand at 3121.297 kb on + strand at 3121.298 kb on - strand at 3121.298 kb on - strand at 3121.298 kb on - strand at 3121.299 kb on + strand at 3121.335 kb on + strand, within Sama_2607 at 3121.377 kb on + strand, within Sama_2607 at 3121.377 kb on + strand, within Sama_2607 at 3121.378 kb on - strand, within Sama_2607 at 3121.378 kb on - strand, within Sama_2607 at 3121.427 kb on + strand, within Sama_2607 at 3121.428 kb on - strand, within Sama_2607 at 3121.428 kb on - strand, within Sama_2607 at 3121.434 kb on + strand, within Sama_2607 at 3121.435 kb on - strand, within Sama_2607 at 3121.435 kb on - strand, within Sama_2607 at 3121.443 kb on + strand, within Sama_2607 at 3121.445 kb on + strand, within Sama_2607 at 3121.445 kb on + strand, within Sama_2607 at 3121.446 kb on - strand, within Sama_2607 at 3121.446 kb on - strand, within Sama_2607 at 3121.465 kb on + strand, within Sama_2607 at 3121.465 kb on + strand, within Sama_2607 at 3121.465 kb on + strand, within Sama_2607 at 3121.465 kb on + strand, within Sama_2607 at 3121.465 kb on + strand, within Sama_2607 at 3121.465 kb on + strand, within Sama_2607 at 3121.465 kb on + strand, within Sama_2607 at 3121.465 kb on + strand, within Sama_2607 at 3121.465 kb on + strand, within Sama_2607 at 3121.465 kb on + strand, within Sama_2607 at 3121.465 kb on + strand, within Sama_2607 at 3121.465 kb on + strand, within Sama_2607 at 3121.465 kb on + strand, within Sama_2607 at 3121.465 kb on + strand, within Sama_2607 at 3121.465 kb on + strand, within Sama_2607 at 3121.465 kb on + strand, within Sama_2607 at 3121.465 kb on + strand, within Sama_2607 at 3121.465 kb on + strand, within Sama_2607 at 3121.465 kb on + strand, within Sama_2607 at 3121.465 kb on + strand, within Sama_2607 at 3121.466 kb on - strand, within Sama_2607 at 3121.466 kb on - strand, within Sama_2607 at 3121.466 kb on - strand, within Sama_2607 at 3121.466 kb on - strand, within Sama_2607 at 3121.466 kb on - strand, within Sama_2607 at 3121.466 kb on - strand, within Sama_2607 at 3121.466 kb on - strand, within Sama_2607 at 3121.466 kb on - strand, within Sama_2607 at 3121.466 kb on - strand, within Sama_2607 at 3121.466 kb on - strand, within Sama_2607 at 3121.466 kb on - strand, within Sama_2607 at 3121.466 kb on - strand, within Sama_2607 at 3121.466 kb on - strand, within Sama_2607 at 3121.466 kb on - strand, within Sama_2607 at 3121.466 kb on - strand, within Sama_2607 at 3121.466 kb on - strand, within Sama_2607 at 3121.466 kb on - strand, within Sama_2607 at 3121.466 kb on - strand, within Sama_2607 at 3121.466 kb on - strand, within Sama_2607 at 3121.466 kb on - strand, within Sama_2607 at 3121.466 kb on - strand, within Sama_2607 at 3121.467 kb on + strand, within Sama_2607 at 3121.467 kb on + strand, within Sama_2607 at 3121.467 kb on + strand, within Sama_2607 at 3121.467 kb on + strand, within Sama_2607 at 3121.467 kb on + strand, within Sama_2607 at 3121.467 kb on + strand, within Sama_2607 at 3121.467 kb on + strand, within Sama_2607 at 3121.467 kb on + strand, within Sama_2607 at 3121.467 kb on + strand, within Sama_2607 at 3121.467 kb on + strand, within Sama_2607 at 3121.467 kb on + strand, within Sama_2607 at 3121.467 kb on + strand, within Sama_2607 at 3121.467 kb on + strand, within Sama_2607 at 3121.467 kb on + strand, within Sama_2607 at 3121.467 kb on + strand, within Sama_2607 at 3121.467 kb on + strand, within Sama_2607 at 3121.467 kb on + strand, within Sama_2607 at 3121.467 kb on + strand, within Sama_2607 at 3121.467 kb on + strand, within Sama_2607 at 3121.467 kb on + strand, within Sama_2607 at 3121.467 kb on + strand, within Sama_2607 at 3121.467 kb on + strand, within Sama_2607 at 3121.467 kb on + strand, within Sama_2607 at 3121.468 kb on - strand, within Sama_2607 at 3121.468 kb on - strand, within Sama_2607 at 3121.468 kb on - strand, within Sama_2607 at 3121.468 kb on - strand, within Sama_2607 at 3121.468 kb on - strand, within Sama_2607 at 3121.468 kb on - strand, within Sama_2607 at 3121.468 kb on - strand, within Sama_2607 at 3121.468 kb on - strand, within Sama_2607 at 3121.468 kb on - strand, within Sama_2607 at 3121.468 kb on - strand, within Sama_2607 at 3121.468 kb on - strand, within Sama_2607 at 3121.468 kb on - strand, within Sama_2607 at 3121.468 kb on - strand, within Sama_2607 at 3121.468 kb on - strand, within Sama_2607 at 3121.468 kb on - strand, within Sama_2607 at 3121.523 kb on + strand, within Sama_2607 at 3121.523 kb on + strand, within Sama_2607 at 3121.524 kb on - strand, within Sama_2607 at 3121.524 kb on - strand, within Sama_2607 at 3121.524 kb on - strand, within Sama_2607 at 3121.553 kb on + strand, within Sama_2607 at 3121.554 kb on - strand, within Sama_2607 at 3121.554 kb on - strand, within Sama_2607 at 3121.554 kb on - strand, within Sama_2607 at 3121.611 kb on + strand, within Sama_2607 at 3121.611 kb on + strand, within Sama_2607 at 3121.612 kb on - strand, within Sama_2607 at 3121.631 kb on + strand, within Sama_2607 at 3121.632 kb on - strand, within Sama_2607 at 3121.632 kb on - strand, within Sama_2607 at 3121.634 kb on + strand, within Sama_2607 at 3121.634 kb on + strand, within Sama_2607 at 3121.634 kb on + strand, within Sama_2607 at 3121.634 kb on + strand, within Sama_2607 at 3121.634 kb on + strand, within Sama_2607 at 3121.634 kb on + strand, within Sama_2607 at 3121.634 kb on + strand, within Sama_2607 at 3121.634 kb on + strand, within Sama_2607 at 3121.635 kb on - strand, within Sama_2607 at 3121.635 kb on - strand, within Sama_2607 at 3121.635 kb on - strand, within Sama_2607 at 3121.635 kb on - strand, within Sama_2607 at 3121.635 kb on - strand, within Sama_2607 at 3121.635 kb on - strand, within Sama_2607 at 3121.635 kb on - strand, within Sama_2607 at 3121.635 kb on - strand, within Sama_2607 at 3121.635 kb on - strand, within Sama_2607 at 3121.709 kb on + strand, within Sama_2607 at 3121.718 kb on + strand, within Sama_2607 at 3121.719 kb on - strand, within Sama_2607 at 3121.808 kb on + strand, within Sama_2607 at 3121.808 kb on + strand, within Sama_2607 at 3121.808 kb on + strand, within Sama_2607 at 3121.881 kb on + strand, within Sama_2607 at 3121.882 kb on - strand, within Sama_2607
Per-strain Table
Position Strand Gene LocusTag Fraction LB, microplate remove 3,120,259 + +1.4 3,120,279 + +0.5 3,120,292 + +0.9 3,120,292 + -1.5 3,120,293 - +1.8 3,120,320 - +0.2 3,120,358 + -1.0 3,120,358 + -0.5 3,120,359 - +1.8 3,120,359 - +0.4 3,120,381 - +0.5 3,120,381 - -0.1 3,120,381 - +0.5 3,120,382 + +1.1 3,120,382 + +3.0 3,120,383 - +0.5 3,120,406 + +0.8 3,120,406 + -0.4 3,120,407 - +0.7 3,120,407 - +0.1 3,120,407 - -0.2 3,120,427 + +2.4 3,120,428 - -0.4 3,120,428 - -0.5 3,120,790 + -0.1 3,120,790 + -0.9 3,120,790 + -0.0 3,120,790 + +0.4 3,120,790 + +0.7 3,120,790 + -1.0 3,120,790 + -0.5 3,120,794 + +0.3 3,120,794 + -1.1 3,120,794 + +0.6 3,120,794 + -1.5 3,120,794 + +0.2 3,120,794 + +0.5 3,120,800 + -0.5 3,120,800 + +0.2 3,120,905 + +0.7 3,120,905 + +1.8 3,120,921 + +1.4 3,120,927 + +0.5 3,120,927 + +0.5 3,120,927 + -0.5 3,120,983 + Sama_R0116 0.57 +1.3 3,120,983 + Sama_R0116 0.57 +1.1 3,121,015 + +0.1 3,121,026 + -2.5 3,121,026 + -0.0 3,121,026 + -0.2 3,121,059 + +1.8 3,121,059 + -1.5 3,121,060 - +0.4 3,121,060 - +0.7 3,121,062 + -0.5 3,121,091 + +1.1 3,121,091 + +0.5 3,121,092 - +0.4 3,121,093 + -0.1 3,121,093 + +2.7 3,121,093 + +1.1 3,121,093 + -0.8 3,121,094 - -0.5 3,121,094 - -0.5 3,121,094 - +0.3 3,121,097 + -0.9 3,121,097 + -0.4 3,121,097 + -0.5 3,121,097 + -0.9 3,121,097 + -0.1 3,121,097 + +0.7 3,121,097 + -1.2 3,121,097 + +1.5 3,121,097 + -0.4 3,121,097 + -1.5 3,121,097 + +0.1 3,121,097 + +1.5 3,121,097 + -1.5 3,121,098 - -0.5 3,121,098 - -0.6 3,121,098 - -0.0 3,121,098 - +0.1 3,121,098 - +0.6 3,121,098 - -0.9 3,121,098 - -1.1 3,121,098 - +2.0 3,121,099 + +0.3 3,121,099 + -0.5 3,121,099 + +0.3 3,121,099 + -0.2 3,121,099 + -0.2 3,121,099 + -0.5 3,121,100 - +0.5 3,121,100 - -1.1 3,121,100 - -2.5 3,121,100 - +0.9 3,121,100 - +1.4 3,121,100 - -0.3 3,121,103 + +0.5 3,121,103 + -0.7 3,121,104 - +0.8 3,121,104 - -0.5 3,121,260 + +0.5 3,121,260 + -0.5 3,121,260 + +1.1 3,121,261 - -0.8 3,121,261 - -0.1 3,121,261 - +0.3 3,121,261 - -0.5 3,121,274 + +0.5 3,121,274 + -0.0 3,121,274 + -0.2 3,121,297 + -1.1 3,121,298 - -1.5 3,121,298 - +1.8 3,121,298 - -0.2 3,121,299 + +0.2 3,121,335 + Sama_2607 0.10 -0.2 3,121,377 + Sama_2607 0.13 +0.1 3,121,377 + Sama_2607 0.13 +0.4 3,121,378 - Sama_2607 0.13 +0.5 3,121,378 - Sama_2607 0.13 +1.3 3,121,427 + Sama_2607 0.16 +1.1 3,121,428 - Sama_2607 0.16 +0.1 3,121,428 - Sama_2607 0.16 -1.0 3,121,434 + Sama_2607 0.16 -0.7 3,121,435 - Sama_2607 0.16 +0.2 3,121,435 - Sama_2607 0.16 -1.2 3,121,443 + Sama_2607 0.17 -0.5 3,121,445 + Sama_2607 0.17 -0.5 3,121,445 + Sama_2607 0.17 +0.1 3,121,446 - Sama_2607 0.17 -0.5 3,121,446 - Sama_2607 0.17 +1.1 3,121,465 + Sama_2607 0.18 +2.1 3,121,465 + Sama_2607 0.18 -1.1 3,121,465 + Sama_2607 0.18 +0.5 3,121,465 + Sama_2607 0.18 +1.1 3,121,465 + Sama_2607 0.18 +0.2 3,121,465 + Sama_2607 0.18 +2.5 3,121,465 + Sama_2607 0.18 -1.2 3,121,465 + Sama_2607 0.18 +1.1 3,121,465 + Sama_2607 0.18 +0.7 3,121,465 + Sama_2607 0.18 -1.2 3,121,465 + Sama_2607 0.18 +0.7 3,121,465 + Sama_2607 0.18 -1.5 3,121,465 + Sama_2607 0.18 +0.1 3,121,465 + Sama_2607 0.18 -1.5 3,121,465 + Sama_2607 0.18 -0.5 3,121,465 + Sama_2607 0.18 +1.1 3,121,465 + Sama_2607 0.18 +1.1 3,121,465 + Sama_2607 0.18 -0.0 3,121,465 + Sama_2607 0.18 +1.1 3,121,465 + Sama_2607 0.18 +0.1 3,121,466 - Sama_2607 0.18 +0.3 3,121,466 - Sama_2607 0.18 +0.7 3,121,466 - Sama_2607 0.18 -0.7 3,121,466 - Sama_2607 0.18 -0.5 3,121,466 - Sama_2607 0.18 +0.8 3,121,466 - Sama_2607 0.18 -1.5 3,121,466 - Sama_2607 0.18 -0.8 3,121,466 - Sama_2607 0.18 +0.3 3,121,466 - Sama_2607 0.18 +0.3 3,121,466 - Sama_2607 0.18 -0.4 3,121,466 - Sama_2607 0.18 -1.4 3,121,466 - Sama_2607 0.18 -0.5 3,121,466 - Sama_2607 0.18 -1.8 3,121,466 - Sama_2607 0.18 +0.3 3,121,466 - Sama_2607 0.18 -0.5 3,121,466 - Sama_2607 0.18 -0.2 3,121,466 - Sama_2607 0.18 +0.8 3,121,466 - Sama_2607 0.18 +0.2 3,121,466 - Sama_2607 0.18 -1.1 3,121,466 - Sama_2607 0.18 -0.2 3,121,466 - Sama_2607 0.18 +0.3 3,121,467 + Sama_2607 0.18 +0.6 3,121,467 + Sama_2607 0.18 +0.2 3,121,467 + Sama_2607 0.18 -0.3 3,121,467 + Sama_2607 0.18 -0.9 3,121,467 + Sama_2607 0.18 -0.5 3,121,467 + Sama_2607 0.18 +0.2 3,121,467 + Sama_2607 0.18 -0.7 3,121,467 + Sama_2607 0.18 -0.8 3,121,467 + Sama_2607 0.18 -0.8 3,121,467 + Sama_2607 0.18 +0.3 3,121,467 + Sama_2607 0.18 +0.5 3,121,467 + Sama_2607 0.18 +0.8 3,121,467 + Sama_2607 0.18 +0.5 3,121,467 + Sama_2607 0.18 -0.0 3,121,467 + Sama_2607 0.18 +0.5 3,121,467 + Sama_2607 0.18 +1.1 3,121,467 + Sama_2607 0.18 -0.8 3,121,467 + Sama_2607 0.18 -0.0 3,121,467 + Sama_2607 0.18 -0.5 3,121,467 + Sama_2607 0.18 +0.8 3,121,467 + Sama_2607 0.18 +1.5 3,121,467 + Sama_2607 0.18 -0.5 3,121,467 + Sama_2607 0.18 +0.1 3,121,468 - Sama_2607 0.18 +0.9 3,121,468 - Sama_2607 0.18 -1.2 3,121,468 - Sama_2607 0.18 -0.9 3,121,468 - Sama_2607 0.18 +0.5 3,121,468 - Sama_2607 0.18 +1.1 3,121,468 - Sama_2607 0.18 +0.1 3,121,468 - Sama_2607 0.18 -0.1 3,121,468 - Sama_2607 0.18 +0.1 3,121,468 - Sama_2607 0.18 -0.7 3,121,468 - Sama_2607 0.18 -0.9 3,121,468 - Sama_2607 0.18 -0.3 3,121,468 - Sama_2607 0.18 -1.2 3,121,468 - Sama_2607 0.18 +1.2 3,121,468 - Sama_2607 0.18 +2.6 3,121,468 - Sama_2607 0.18 -1.3 3,121,523 + Sama_2607 0.22 +0.3 3,121,523 + Sama_2607 0.22 -0.7 3,121,524 - Sama_2607 0.22 +0.5 3,121,524 - Sama_2607 0.22 +0.5 3,121,524 - Sama_2607 0.22 +0.7 3,121,553 + Sama_2607 0.23 -1.8 3,121,554 - Sama_2607 0.24 -0.5 3,121,554 - Sama_2607 0.24 +2.4 3,121,554 - Sama_2607 0.24 -1.4 3,121,611 + Sama_2607 0.27 -1.9 3,121,611 + Sama_2607 0.27 -0.1 3,121,612 - Sama_2607 0.27 +1.3 3,121,631 + Sama_2607 0.28 +0.3 3,121,632 - Sama_2607 0.28 -0.1 3,121,632 - Sama_2607 0.28 -1.2 3,121,634 + Sama_2607 0.28 +0.3 3,121,634 + Sama_2607 0.28 -0.0 3,121,634 + Sama_2607 0.28 -0.1 3,121,634 + Sama_2607 0.28 +0.1 3,121,634 + Sama_2607 0.28 -1.8 3,121,634 + Sama_2607 0.28 +1.0 3,121,634 + Sama_2607 0.28 +1.1 3,121,634 + Sama_2607 0.28 -0.9 3,121,635 - Sama_2607 0.29 +0.9 3,121,635 - Sama_2607 0.29 +1.0 3,121,635 - Sama_2607 0.29 -0.8 3,121,635 - Sama_2607 0.29 +1.1 3,121,635 - Sama_2607 0.29 +2.3 3,121,635 - Sama_2607 0.29 +0.8 3,121,635 - Sama_2607 0.29 +0.7 3,121,635 - Sama_2607 0.29 +0.6 3,121,635 - Sama_2607 0.29 -3.1 3,121,709 + Sama_2607 0.33 +0.1 3,121,718 + Sama_2607 0.34 +0.9 3,121,719 - Sama_2607 0.34 +1.1 3,121,808 + Sama_2607 0.39 +0.5 3,121,808 + Sama_2607 0.39 -2.0 3,121,808 + Sama_2607 0.39 +0.5 3,121,881 + Sama_2607 0.44 -1.5 3,121,882 - Sama_2607 0.44 -0.8
Or see this region's nucleotide sequence