Strain Fitness in Shewanella amazonensis SB2B around Sama_1012

Experiment: LB, microplate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB, microplate
1,224,675	-		Sama_1010	0.73	+0.2
1,224,835	-				+0.3
1,224,835	-				+1.7
1,224,835	-				+0.7
1,224,835	-				-0.5
1,225,001	+		Sama_1011	0.24	+0.5
1,225,023	+		Sama_1011	0.27	-0.5
1,225,048	+		Sama_1011	0.31	+0.3
1,225,051	+		Sama_1011	0.31	+0.8
1,225,051	+		Sama_1011	0.31	+1.2
1,225,052	-		Sama_1011	0.31	+0.6
1,225,057	+		Sama_1011	0.32	+0.2
1,225,057	+		Sama_1011	0.32	+1.1
1,225,057	+		Sama_1011	0.32	+0.5
1,225,072	+		Sama_1011	0.34	+0.9
1,225,072	+		Sama_1011	0.34	-0.5
1,225,072	+		Sama_1011	0.34	+1.1
1,225,072	+		Sama_1011	0.34	-0.8
1,225,073	-		Sama_1011	0.34	-0.5
1,225,073	-		Sama_1011	0.34	-0.2
1,225,120	-		Sama_1011	0.40	-1.1
1,225,120	-		Sama_1011	0.40	-0.1
1,225,123	+		Sama_1011	0.41	+0.5
1,225,123	+		Sama_1011	0.41	+1.0
1,225,123	+		Sama_1011	0.41	+0.5
1,225,123	+		Sama_1011	0.41	-1.1
1,225,123	+		Sama_1011	0.41	+0.5
1,225,124	-		Sama_1011	0.41	-0.5
1,225,124	-		Sama_1011	0.41	+0.5
1,225,124	-		Sama_1011	0.41	+0.7
1,225,124	-		Sama_1011	0.41	+0.2
1,225,124	-		Sama_1011	0.41	+1.6
1,225,124	-		Sama_1011	0.41	+0.7
1,225,168	+		Sama_1011	0.47	+1.7
1,225,208	+		Sama_1011	0.52	+0.1
1,225,209	-		Sama_1011	0.52	+1.5
1,225,236	+		Sama_1011	0.56	+0.1
1,225,236	+		Sama_1011	0.56	+0.2
1,225,272	-		Sama_1011	0.61	+1.3
1,225,274	+		Sama_1011	0.61	-1.8
1,225,274	+		Sama_1011	0.61	+1.5
1,225,275	-		Sama_1011	0.61	+0.5
1,225,302	-		Sama_1011	0.65	+1.1
1,225,314	+		Sama_1011	0.66	+0.9
1,225,314	+		Sama_1011	0.66	-0.0
1,225,314	+		Sama_1011	0.66	+1.1
1,225,315	-		Sama_1011	0.66	+0.2
1,225,338	+		Sama_1011	0.69	+0.5
1,225,339	-		Sama_1011	0.69	+0.1
1,225,339	-		Sama_1011	0.69	+0.2
1,225,342	-		Sama_1011	0.70	+0.5
1,225,342	-		Sama_1011	0.70	-1.0
1,225,342	-		Sama_1011	0.70	+1.1
1,225,374	+		Sama_1011	0.74	+0.1
1,225,375	-		Sama_1011	0.74	-0.1
1,225,382	-		Sama_1011	0.75	-1.0
1,225,389	-		Sama_1011	0.76	+1.5
1,225,457	+		Sama_1011	0.85	-0.9
1,225,458	-		Sama_1011	0.85	+0.7
1,225,510	+				+0.1
1,225,512	+				-0.1
1,225,529	-				+0.5
1,225,529	-				+0.5
1,225,529	-				-0.5
1,225,529	-				-0.1
1,225,537	+				-0.5
1,225,537	+				-0.4
1,225,538	-				+0.5
1,225,538	-				+1.2
1,225,538	-				+2.1
1,225,538	-				-1.5
1,225,538	-				+1.0
1,225,549	+				+0.7
1,225,566	+				-0.1
1,225,567	-				+0.5
1,225,610	-				+1.5
1,225,611	+				+0.2
1,225,611	+				-0.1
1,225,611	+				-0.5
1,225,611	+				+1.6
1,225,611	+				+0.2
1,225,612	-				-1.1
1,225,612	-				-0.6
1,225,612	-				+0.5
1,225,612	-				+0.1
1,225,615	-				+0.1
1,225,615	-				-0.5
1,225,668	+				-0.5
1,225,675	+				+0.5
1,225,685	+				+1.8
1,225,686	-				+1.5
1,225,686	-				+0.7
1,225,708	+				-0.5
1,225,709	-				-0.1
1,225,804	+		Sama_1012	0.12	+0.4
1,225,804	+		Sama_1012	0.12	+0.4
1,225,805	-		Sama_1012	0.13	+1.7
1,225,805	-		Sama_1012	0.13	+0.2
1,225,832	+		Sama_1012	0.15	-0.7
1,225,832	+		Sama_1012	0.15	+1.1
1,225,845	+		Sama_1012	0.16	-1.1
1,225,845	+		Sama_1012	0.16	-0.1
1,225,845	+		Sama_1012	0.16	+1.1
1,225,846	-		Sama_1012	0.17	-1.3
1,225,846	-		Sama_1012	0.17	-0.5
1,225,868	+		Sama_1012	0.19	+0.8
1,225,868	+		Sama_1012	0.19	+1.1
1,225,869	-		Sama_1012	0.19	+1.1
1,225,913	-		Sama_1012	0.23	+0.5
1,225,940	+		Sama_1012	0.26	+1.4
1,225,940	+		Sama_1012	0.26	-0.8
1,225,942	+		Sama_1012	0.26	+1.7
1,225,942	+		Sama_1012	0.26	-0.0
1,225,943	-		Sama_1012	0.26	+0.8
1,225,943	-		Sama_1012	0.26	-1.3
1,225,998	-		Sama_1012	0.31	-0.2
1,226,075	+		Sama_1012	0.39	+2.1
1,226,075	+		Sama_1012	0.39	+0.4
1,226,075	+		Sama_1012	0.39	+0.5
1,226,084	+		Sama_1012	0.39	+0.5
1,226,084	+		Sama_1012	0.39	+1.7
1,226,085	-		Sama_1012	0.39	+0.6
1,226,085	-		Sama_1012	0.39	-0.9
1,226,091	+		Sama_1012	0.40	+0.7
1,226,098	-		Sama_1012	0.41	+0.2
1,226,149	+		Sama_1012	0.46	+0.0
1,226,150	-		Sama_1012	0.46	-1.5
1,226,150	-		Sama_1012	0.46	-0.5
1,226,189	+		Sama_1012	0.49	+1.1
1,226,214	+		Sama_1012	0.52	+0.2
1,226,214	+		Sama_1012	0.52	+0.5
1,226,214	+		Sama_1012	0.52	+1.0
1,226,214	+		Sama_1012	0.52	+0.9
1,226,215	-		Sama_1012	0.52	+1.1
1,226,302	+		Sama_1012	0.60	-0.1
1,226,302	+		Sama_1012	0.60	+1.1
1,226,302	+		Sama_1012	0.60	+0.2
1,226,303	-		Sama_1012	0.60	-0.5
1,226,303	-		Sama_1012	0.60	-0.3
1,226,349	-		Sama_1012	0.65	+0.5
1,226,396	+		Sama_1012	0.69	+0.5
1,226,396	+		Sama_1012	0.69	+1.3
1,226,397	-		Sama_1012	0.69	+0.5
1,226,397	-		Sama_1012	0.69	-0.0
1,226,397	-		Sama_1012	0.69	+0.4
1,226,406	+		Sama_1012	0.70	+0.6
1,226,407	-		Sama_1012	0.70	+1.0
1,226,407	-		Sama_1012	0.70	+0.2
1,226,407	-		Sama_1012	0.70	+0.6
1,226,424	+		Sama_1012	0.72	-0.7
1,226,424	+		Sama_1012	0.72	-0.3
1,226,424	+		Sama_1012	0.72	-1.0
1,226,443	+		Sama_1012	0.74	-0.3
1,226,443	+		Sama_1012	0.74	+0.3
1,226,505	+		Sama_1012	0.80	+0.3
1,226,505	+		Sama_1012	0.80	-0.3
1,226,505	+		Sama_1012	0.80	+1.1
1,226,505	+		Sama_1012	0.80	+1.5
1,226,505	+		Sama_1012	0.80	+0.5
1,226,505	+		Sama_1012	0.80	+1.5
1,226,505	+		Sama_1012	0.80	+1.0
1,226,506	-		Sama_1012	0.80	+0.2
1,226,506	-		Sama_1012	0.80	-0.1
1,226,506	-		Sama_1012	0.80	-0.1
1,226,512	+		Sama_1012	0.80	+1.5
1,226,513	-		Sama_1012	0.81	-0.5
1,226,513	-		Sama_1012	0.81	-0.5
1,226,592	+		Sama_1012	0.88	+0.3
1,226,593	-		Sama_1012	0.88	+0.4
1,226,607	+		Sama_1012	0.90	-0.3
1,226,607	+		Sama_1012	0.90	-0.8
1,226,650	+				-1.3
1,226,650	+				+0.6
1,226,650	+				-0.7
1,226,650	+				-1.7
1,226,651	-				-1.2
1,226,700	+				-0.4
1,226,744	+				-0.8
1,226,744	+				+0.5
1,226,744	+				-0.2
1,226,745	-				+0.9
1,226,748	+				+0.3
1,226,748	+				+0.7
1,226,749	-				+0.2
1,226,749	-				+0.1
1,226,749	-				-0.1
1,226,749	-				+0.6
1,226,798	+				-1.0
1,226,798	+				+0.8
1,226,799	-				+1.3
1,226,837	-				-0.1
1,226,837	-				+0.8
1,226,884	+				-1.5
1,226,884	+				+1.5
1,226,916	+				-1.1
1,226,917	-				+0.1
1,226,917	-				+0.5
1,226,934	+				+1.8
1,226,934	+				-1.5
1,226,934	+				+0.1
1,226,935	-				-0.2
1,226,935	-				+0.9
1,226,947	+				-0.5
1,226,947	+				-0.2
1,226,947	+				+0.5
1,226,948	-				+1.8
1,226,949	+				+1.5
1,226,949	+				-0.2
1,226,980	-				+0.7
1,227,014	+				-0.5
1,227,014	+				+2.1
1,227,027	+				+0.1
1,227,033	+				-0.5
1,227,033	+				+1.4
1,227,037	+				-0.5
1,227,037	+				+0.8
1,227,038	-				-0.5
1,227,095	+				-1.0
1,227,105	+				+0.2
1,227,106	-				+1.1
1,227,106	-				-0.5
1,227,123	+				-0.5
1,227,124	-				+0.1
1,227,159	+				+1.8
1,227,160	-				-0.3
1,227,160	-				+0.8
1,227,178	+				+0.3
1,227,179	-				+0.5
1,227,183	+				+1.7
1,227,183	+				-0.3
1,227,183	+				+0.4
1,227,184	-				-0.5
1,227,184	-				+0.1
1,227,184	-				+0.5
1,227,192	+				-1.7
1,227,192	+				-0.2
1,227,193	-				+1.4
1,227,193	-				-1.5
1,227,193	-				-0.5
1,227,193	-				-0.1
1,227,197	-				+0.5
1,227,197	-				+0.5
1,227,204	+				-0.5
1,227,205	-				+1.1
1,227,231	+				+1.0
1,227,248	-				+1.1
1,227,253	+				+1.5
1,227,254	-				+0.5
1,227,377	+		Sama_1013	0.16	-1.1
1,227,377	+		Sama_1013	0.16	+0.5
1,227,377	+		Sama_1013	0.16	+0.5
1,227,378	-		Sama_1013	0.16	-1.2
1,227,378	-		Sama_1013	0.16	+0.9
1,227,378	-		Sama_1013	0.16	-1.1
1,227,478	+		Sama_1013	0.22	-0.1
1,227,479	-		Sama_1013	0.22	-0.6
1,227,493	-		Sama_1013	0.23	+0.2