Strain Fitness in Marinobacter adhaerens HP15 around HP15_78

Experiment: L-Isoleucine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_76 and HP15_77 are separated by 443 nucleotidesHP15_77 and HP15_78 are separated by 68 nucleotidesHP15_78 and HP15_79 are separated by 85 nucleotides HP15_76: HP15_76 - phage integrase family protein-like protein, at 84,123 to 87,473 _76 HP15_77: HP15_77 - hypothetical protein, at 87,917 to 88,117 _77 HP15_78: HP15_78 - hypothetical protein, at 88,186 to 88,380 _78 HP15_79: HP15_79 - phage integrase family protein, at 88,466 to 89,674 _79 Position (kb) 88 89Strain fitness (log2 ratio) -1 0 1at 87.351 kb on + strandat 87.359 kb on + strandat 87.448 kb on - strandat 87.500 kb on - strandat 87.537 kb on - strandat 87.617 kb on + strandat 87.617 kb on + strandat 87.717 kb on - strandat 87.854 kb on - strandat 87.872 kb on + strandat 88.120 kb on + strandat 88.120 kb on + strandat 88.120 kb on + strandat 88.128 kb on - strandat 88.149 kb on + strandat 88.152 kb on - strandat 88.197 kb on + strandat 88.252 kb on - strand, within HP15_78at 88.292 kb on - strand, within HP15_78at 88.292 kb on - strand, within HP15_78at 88.380 kb on + strandat 88.423 kb on - strandat 88.463 kb on + strandat 88.610 kb on + strand, within HP15_79at 88.613 kb on - strand, within HP15_79at 88.636 kb on + strand, within HP15_79at 88.732 kb on - strand, within HP15_79at 88.732 kb on - strand, within HP15_79at 88.756 kb on - strand, within HP15_79at 88.814 kb on + strand, within HP15_79at 88.986 kb on + strand, within HP15_79at 89.021 kb on - strand, within HP15_79at 89.063 kb on - strand, within HP15_79at 89.100 kb on + strand, within HP15_79at 89.110 kb on + strand, within HP15_79

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine as (N)
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87,351 + -0.2
87,359 + +0.1
87,448 - +1.2
87,500 - +0.8
87,537 - -0.1
87,617 + -0.1
87,617 + -0.2
87,717 - +0.2
87,854 - +0.6
87,872 + +0.3
88,120 + +0.1
88,120 + -0.1
88,120 + +0.6
88,128 - -0.2
88,149 + +0.0
88,152 - +1.0
88,197 + +0.0
88,252 - HP15_78 0.34 -0.3
88,292 - HP15_78 0.54 -0.7
88,292 - HP15_78 0.54 -1.4
88,380 + -0.0
88,423 - -0.3
88,463 + -0.8
88,610 + HP15_79 0.12 -0.7
88,613 - HP15_79 0.12 +0.5
88,636 + HP15_79 0.14 +0.0
88,732 - HP15_79 0.22 -1.0
88,732 - HP15_79 0.22 -0.3
88,756 - HP15_79 0.24 -0.2
88,814 + HP15_79 0.29 -0.1
88,986 + HP15_79 0.43 +0.1
89,021 - HP15_79 0.46 -0.0
89,063 - HP15_79 0.49 +0.8
89,100 + HP15_79 0.52 -0.5
89,110 + HP15_79 0.53 +1.1

Or see this region's nucleotide sequence