Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c15210

Experiment: m.b. Cobalt chloride 0.625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c15200 and PGA1_c15210 are separated by 161 nucleotidesPGA1_c15210 and PGA1_c15220 are separated by 264 nucleotides PGA1_c15200: PGA1_c15200 - ATP-dependent reduction of co(II)balamin (RamA-like) (EC:2.1.1.13) (from data), at 1,579,627 to 1,581,723 _c15200 PGA1_c15210: PGA1_c15210 - putative CoA-transferase, at 1,581,885 to 1,583,060 _c15210 PGA1_c15220: PGA1_c15220 - inosine-5'-monophosphate dehydrogenase GuaB, at 1,583,325 to 1,584,773 _c15220 Position (kb) 1581 1582 1583 1584Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1580.908 kb on + strand, within PGA1_c15200at 1581.027 kb on + strand, within PGA1_c15200at 1581.033 kb on + strand, within PGA1_c15200at 1581.490 kb on + strand, within PGA1_c15200at 1581.654 kb on - strandat 1581.732 kb on - strandat 1581.732 kb on - strandat 1581.852 kb on + strandat 1581.968 kb on - strandat 1582.024 kb on + strand, within PGA1_c15210at 1582.024 kb on + strand, within PGA1_c15210at 1582.032 kb on - strand, within PGA1_c15210at 1582.039 kb on + strand, within PGA1_c15210at 1582.054 kb on - strand, within PGA1_c15210at 1582.083 kb on + strand, within PGA1_c15210at 1582.083 kb on + strand, within PGA1_c15210at 1582.114 kb on + strand, within PGA1_c15210at 1582.141 kb on - strand, within PGA1_c15210at 1582.159 kb on + strand, within PGA1_c15210at 1582.168 kb on + strand, within PGA1_c15210at 1582.168 kb on + strand, within PGA1_c15210at 1582.186 kb on - strand, within PGA1_c15210at 1582.186 kb on - strand, within PGA1_c15210at 1582.197 kb on + strand, within PGA1_c15210at 1582.266 kb on - strand, within PGA1_c15210at 1582.275 kb on + strand, within PGA1_c15210at 1582.275 kb on + strand, within PGA1_c15210at 1582.275 kb on + strand, within PGA1_c15210at 1582.275 kb on + strand, within PGA1_c15210at 1582.275 kb on + strand, within PGA1_c15210at 1582.275 kb on + strand, within PGA1_c15210at 1582.275 kb on + strand, within PGA1_c15210at 1582.283 kb on - strand, within PGA1_c15210at 1582.283 kb on - strand, within PGA1_c15210at 1582.285 kb on + strand, within PGA1_c15210at 1582.362 kb on - strand, within PGA1_c15210at 1582.400 kb on + strand, within PGA1_c15210at 1582.412 kb on + strand, within PGA1_c15210at 1582.487 kb on - strand, within PGA1_c15210at 1582.659 kb on - strand, within PGA1_c15210at 1582.686 kb on + strand, within PGA1_c15210at 1582.797 kb on - strand, within PGA1_c15210at 1582.801 kb on + strand, within PGA1_c15210at 1582.801 kb on + strand, within PGA1_c15210at 1582.801 kb on + strand, within PGA1_c15210at 1582.809 kb on - strand, within PGA1_c15210at 1582.809 kb on - strand, within PGA1_c15210at 1582.844 kb on + strand, within PGA1_c15210at 1582.844 kb on + strand, within PGA1_c15210at 1582.844 kb on + strand, within PGA1_c15210at 1582.852 kb on - strand, within PGA1_c15210at 1582.852 kb on - strand, within PGA1_c15210at 1582.896 kb on + strand, within PGA1_c15210at 1582.911 kb on - strand, within PGA1_c15210at 1582.997 kb on + strandat 1582.997 kb on - strandat 1583.018 kb on + strandat 1583.044 kb on - strandat 1583.059 kb on + strandat 1583.143 kb on - strandat 1583.143 kb on - strandat 1583.182 kb on + strandat 1583.187 kb on + strandat 1583.195 kb on - strandat 1583.197 kb on + strandat 1583.205 kb on + strandat 1583.205 kb on + strandat 1583.212 kb on - strandat 1583.212 kb on - strandat 1583.318 kb on - strandat 1583.340 kb on + strandat 1583.364 kb on - strandat 1583.374 kb on - strandat 1583.433 kb on + strandat 1583.445 kb on + strandat 1583.593 kb on + strand, within PGA1_c15220at 1583.633 kb on - strand, within PGA1_c15220at 1583.662 kb on + strand, within PGA1_c15220at 1583.824 kb on - strand, within PGA1_c15220at 1583.895 kb on + strand, within PGA1_c15220at 1583.905 kb on + strand, within PGA1_c15220

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.625 mM
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1,580,908 + PGA1_c15200 0.61 +0.7
1,581,027 + PGA1_c15200 0.67 +0.7
1,581,033 + PGA1_c15200 0.67 -0.5
1,581,490 + PGA1_c15200 0.89 +0.4
1,581,654 - +1.5
1,581,732 - +0.7
1,581,732 - -0.9
1,581,852 + -0.7
1,581,968 - -0.7
1,582,024 + PGA1_c15210 0.12 -0.1
1,582,024 + PGA1_c15210 0.12 -1.3
1,582,032 - PGA1_c15210 0.12 -1.9
1,582,039 + PGA1_c15210 0.13 +0.4
1,582,054 - PGA1_c15210 0.14 -0.3
1,582,083 + PGA1_c15210 0.17 -0.3
1,582,083 + PGA1_c15210 0.17 +0.4
1,582,114 + PGA1_c15210 0.19 -1.2
1,582,141 - PGA1_c15210 0.22 +1.3
1,582,159 + PGA1_c15210 0.23 -0.3
1,582,168 + PGA1_c15210 0.24 -0.6
1,582,168 + PGA1_c15210 0.24 -0.9
1,582,186 - PGA1_c15210 0.26 +0.7
1,582,186 - PGA1_c15210 0.26 -0.0
1,582,197 + PGA1_c15210 0.27 -0.2
1,582,266 - PGA1_c15210 0.32 +0.7
1,582,275 + PGA1_c15210 0.33 -0.2
1,582,275 + PGA1_c15210 0.33 -1.9
1,582,275 + PGA1_c15210 0.33 +0.2
1,582,275 + PGA1_c15210 0.33 -0.5
1,582,275 + PGA1_c15210 0.33 +0.4
1,582,275 + PGA1_c15210 0.33 +0.6
1,582,275 + PGA1_c15210 0.33 -2.1
1,582,283 - PGA1_c15210 0.34 -1.0
1,582,283 - PGA1_c15210 0.34 -0.5
1,582,285 + PGA1_c15210 0.34 -1.6
1,582,362 - PGA1_c15210 0.41 +0.1
1,582,400 + PGA1_c15210 0.44 -0.6
1,582,412 + PGA1_c15210 0.45 -1.3
1,582,487 - PGA1_c15210 0.51 -1.3
1,582,659 - PGA1_c15210 0.66 -0.6
1,582,686 + PGA1_c15210 0.68 -1.9
1,582,797 - PGA1_c15210 0.78 -1.2
1,582,801 + PGA1_c15210 0.78 +0.2
1,582,801 + PGA1_c15210 0.78 +0.4
1,582,801 + PGA1_c15210 0.78 +1.5
1,582,809 - PGA1_c15210 0.79 -1.9
1,582,809 - PGA1_c15210 0.79 -0.1
1,582,844 + PGA1_c15210 0.82 -0.3
1,582,844 + PGA1_c15210 0.82 +0.7
1,582,844 + PGA1_c15210 0.82 +3.0
1,582,852 - PGA1_c15210 0.82 +1.3
1,582,852 - PGA1_c15210 0.82 +2.1
1,582,896 + PGA1_c15210 0.86 -3.1
1,582,911 - PGA1_c15210 0.87 -0.4
1,582,997 + -0.1
1,582,997 - -2.1
1,583,018 + -0.8
1,583,044 - +0.1
1,583,059 + +0.1
1,583,143 - -0.0
1,583,143 - -0.5
1,583,182 + +0.7
1,583,187 + +1.0
1,583,195 - -0.9
1,583,197 + +0.5
1,583,205 + +0.7
1,583,205 + +1.0
1,583,212 - -0.6
1,583,212 - -1.3
1,583,318 - -1.3
1,583,340 + -1.2
1,583,364 - -1.9
1,583,374 - -0.9
1,583,433 + +1.9
1,583,445 + -0.3
1,583,593 + PGA1_c15220 0.18 -0.2
1,583,633 - PGA1_c15220 0.21 +0.0
1,583,662 + PGA1_c15220 0.23 +0.7
1,583,824 - PGA1_c15220 0.34 +1.7
1,583,895 + PGA1_c15220 0.39 -1.1
1,583,905 + PGA1_c15220 0.40 +0.6

Or see this region's nucleotide sequence