Experiment: m.b. Cobalt chloride 0.625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c15200 and PGA1_c15210 are separated by 161 nucleotides PGA1_c15210 and PGA1_c15220 are separated by 264 nucleotides
PGA1_c15200: PGA1_c15200 - ATP-dependent reduction of co(II)balamin (RamA-like) (EC:2.1.1.13) (from data) , at 1,579,627 to 1,581,723
_c15200
PGA1_c15210: PGA1_c15210 - putative CoA-transferase, at 1,581,885 to 1,583,060
_c15210
PGA1_c15220: PGA1_c15220 - inosine-5'-monophosphate dehydrogenase GuaB, at 1,583,325 to 1,584,773
_c15220
Position (kb)
1581
1582
1583
1584 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1580.908 kb on + strand, within PGA1_c15200 at 1581.027 kb on + strand, within PGA1_c15200 at 1581.033 kb on + strand, within PGA1_c15200 at 1581.490 kb on + strand, within PGA1_c15200 at 1581.654 kb on - strand at 1581.732 kb on - strand at 1581.732 kb on - strand at 1581.852 kb on + strand at 1581.968 kb on - strand at 1582.024 kb on + strand, within PGA1_c15210 at 1582.024 kb on + strand, within PGA1_c15210 at 1582.032 kb on - strand, within PGA1_c15210 at 1582.039 kb on + strand, within PGA1_c15210 at 1582.054 kb on - strand, within PGA1_c15210 at 1582.083 kb on + strand, within PGA1_c15210 at 1582.083 kb on + strand, within PGA1_c15210 at 1582.114 kb on + strand, within PGA1_c15210 at 1582.141 kb on - strand, within PGA1_c15210 at 1582.159 kb on + strand, within PGA1_c15210 at 1582.168 kb on + strand, within PGA1_c15210 at 1582.168 kb on + strand, within PGA1_c15210 at 1582.186 kb on - strand, within PGA1_c15210 at 1582.186 kb on - strand, within PGA1_c15210 at 1582.197 kb on + strand, within PGA1_c15210 at 1582.266 kb on - strand, within PGA1_c15210 at 1582.275 kb on + strand, within PGA1_c15210 at 1582.275 kb on + strand, within PGA1_c15210 at 1582.275 kb on + strand, within PGA1_c15210 at 1582.275 kb on + strand, within PGA1_c15210 at 1582.275 kb on + strand, within PGA1_c15210 at 1582.275 kb on + strand, within PGA1_c15210 at 1582.275 kb on + strand, within PGA1_c15210 at 1582.283 kb on - strand, within PGA1_c15210 at 1582.283 kb on - strand, within PGA1_c15210 at 1582.285 kb on + strand, within PGA1_c15210 at 1582.362 kb on - strand, within PGA1_c15210 at 1582.400 kb on + strand, within PGA1_c15210 at 1582.412 kb on + strand, within PGA1_c15210 at 1582.487 kb on - strand, within PGA1_c15210 at 1582.659 kb on - strand, within PGA1_c15210 at 1582.686 kb on + strand, within PGA1_c15210 at 1582.797 kb on - strand, within PGA1_c15210 at 1582.801 kb on + strand, within PGA1_c15210 at 1582.801 kb on + strand, within PGA1_c15210 at 1582.801 kb on + strand, within PGA1_c15210 at 1582.809 kb on - strand, within PGA1_c15210 at 1582.809 kb on - strand, within PGA1_c15210 at 1582.844 kb on + strand, within PGA1_c15210 at 1582.844 kb on + strand, within PGA1_c15210 at 1582.844 kb on + strand, within PGA1_c15210 at 1582.852 kb on - strand, within PGA1_c15210 at 1582.852 kb on - strand, within PGA1_c15210 at 1582.896 kb on + strand, within PGA1_c15210 at 1582.911 kb on - strand, within PGA1_c15210 at 1582.997 kb on + strand at 1582.997 kb on - strand at 1583.018 kb on + strand at 1583.044 kb on - strand at 1583.059 kb on + strand at 1583.143 kb on - strand at 1583.143 kb on - strand at 1583.182 kb on + strand at 1583.187 kb on + strand at 1583.195 kb on - strand at 1583.197 kb on + strand at 1583.205 kb on + strand at 1583.205 kb on + strand at 1583.212 kb on - strand at 1583.212 kb on - strand at 1583.318 kb on - strand at 1583.340 kb on + strand at 1583.364 kb on - strand at 1583.374 kb on - strand at 1583.433 kb on + strand at 1583.445 kb on + strand at 1583.593 kb on + strand, within PGA1_c15220 at 1583.633 kb on - strand, within PGA1_c15220 at 1583.662 kb on + strand, within PGA1_c15220 at 1583.824 kb on - strand, within PGA1_c15220 at 1583.895 kb on + strand, within PGA1_c15220 at 1583.905 kb on + strand, within PGA1_c15220
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.625 mM remove 1,580,908 + PGA1_c15200 0.61 +0.7 1,581,027 + PGA1_c15200 0.67 +0.7 1,581,033 + PGA1_c15200 0.67 -0.5 1,581,490 + PGA1_c15200 0.89 +0.4 1,581,654 - +1.5 1,581,732 - +0.7 1,581,732 - -0.9 1,581,852 + -0.7 1,581,968 - -0.7 1,582,024 + PGA1_c15210 0.12 -0.1 1,582,024 + PGA1_c15210 0.12 -1.3 1,582,032 - PGA1_c15210 0.12 -1.9 1,582,039 + PGA1_c15210 0.13 +0.4 1,582,054 - PGA1_c15210 0.14 -0.3 1,582,083 + PGA1_c15210 0.17 -0.3 1,582,083 + PGA1_c15210 0.17 +0.4 1,582,114 + PGA1_c15210 0.19 -1.2 1,582,141 - PGA1_c15210 0.22 +1.3 1,582,159 + PGA1_c15210 0.23 -0.3 1,582,168 + PGA1_c15210 0.24 -0.6 1,582,168 + PGA1_c15210 0.24 -0.9 1,582,186 - PGA1_c15210 0.26 +0.7 1,582,186 - PGA1_c15210 0.26 -0.0 1,582,197 + PGA1_c15210 0.27 -0.2 1,582,266 - PGA1_c15210 0.32 +0.7 1,582,275 + PGA1_c15210 0.33 -0.2 1,582,275 + PGA1_c15210 0.33 -1.9 1,582,275 + PGA1_c15210 0.33 +0.2 1,582,275 + PGA1_c15210 0.33 -0.5 1,582,275 + PGA1_c15210 0.33 +0.4 1,582,275 + PGA1_c15210 0.33 +0.6 1,582,275 + PGA1_c15210 0.33 -2.1 1,582,283 - PGA1_c15210 0.34 -1.0 1,582,283 - PGA1_c15210 0.34 -0.5 1,582,285 + PGA1_c15210 0.34 -1.6 1,582,362 - PGA1_c15210 0.41 +0.1 1,582,400 + PGA1_c15210 0.44 -0.6 1,582,412 + PGA1_c15210 0.45 -1.3 1,582,487 - PGA1_c15210 0.51 -1.3 1,582,659 - PGA1_c15210 0.66 -0.6 1,582,686 + PGA1_c15210 0.68 -1.9 1,582,797 - PGA1_c15210 0.78 -1.2 1,582,801 + PGA1_c15210 0.78 +0.2 1,582,801 + PGA1_c15210 0.78 +0.4 1,582,801 + PGA1_c15210 0.78 +1.5 1,582,809 - PGA1_c15210 0.79 -1.9 1,582,809 - PGA1_c15210 0.79 -0.1 1,582,844 + PGA1_c15210 0.82 -0.3 1,582,844 + PGA1_c15210 0.82 +0.7 1,582,844 + PGA1_c15210 0.82 +3.0 1,582,852 - PGA1_c15210 0.82 +1.3 1,582,852 - PGA1_c15210 0.82 +2.1 1,582,896 + PGA1_c15210 0.86 -3.1 1,582,911 - PGA1_c15210 0.87 -0.4 1,582,997 + -0.1 1,582,997 - -2.1 1,583,018 + -0.8 1,583,044 - +0.1 1,583,059 + +0.1 1,583,143 - -0.0 1,583,143 - -0.5 1,583,182 + +0.7 1,583,187 + +1.0 1,583,195 - -0.9 1,583,197 + +0.5 1,583,205 + +0.7 1,583,205 + +1.0 1,583,212 - -0.6 1,583,212 - -1.3 1,583,318 - -1.3 1,583,340 + -1.2 1,583,364 - -1.9 1,583,374 - -0.9 1,583,433 + +1.9 1,583,445 + -0.3 1,583,593 + PGA1_c15220 0.18 -0.2 1,583,633 - PGA1_c15220 0.21 +0.0 1,583,662 + PGA1_c15220 0.23 +0.7 1,583,824 - PGA1_c15220 0.34 +1.7 1,583,895 + PGA1_c15220 0.39 -1.1 1,583,905 + PGA1_c15220 0.40 +0.6
Or see this region's nucleotide sequence