Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3717 and Shewana3_3718 are separated by 168 nucleotides Shewana3_3718 and Shewana3_3719 are separated by 15 nucleotides
Shewana3_3717: Shewana3_3717 - putative manganese-dependent inorganic pyrophosphatase (RefSeq), at 4,460,267 to 4,461,187
_3717
Shewana3_3718: Shewana3_3718 - DedA family protein (RefSeq), at 4,461,356 to 4,461,967
_3718
Shewana3_3719: Shewana3_3719 - hypothetical protein (RefSeq), at 4,461,983 to 4,463,518
_3719
Position (kb)
4461
4462 Strain fitness (log2 ratio)
-2
-1
0
1 at 4461.293 kb on - strand at 4461.552 kb on + strand, within Shewana3_3718 at 4461.673 kb on + strand, within Shewana3_3718 at 4461.714 kb on + strand, within Shewana3_3718 at 4461.714 kb on + strand, within Shewana3_3718 at 4461.722 kb on - strand, within Shewana3_3718 at 4461.976 kb on - strand at 4461.980 kb on + strand at 4461.990 kb on + strand at 4462.245 kb on + strand, within Shewana3_3719 at 4462.318 kb on + strand, within Shewana3_3719 at 4462.361 kb on + strand, within Shewana3_3719 at 4462.706 kb on - strand, within Shewana3_3719 at 4462.772 kb on + strand, within Shewana3_3719 at 4462.853 kb on + strand, within Shewana3_3719 at 4462.853 kb on + strand, within Shewana3_3719 at 4462.941 kb on - strand, within Shewana3_3719 at 4462.965 kb on + strand, within Shewana3_3719
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 4,461,293 - +0.4 4,461,552 + Shewana3_3718 0.32 -1.1 4,461,673 + Shewana3_3718 0.52 +0.0 4,461,714 + Shewana3_3718 0.58 -1.9 4,461,714 + Shewana3_3718 0.58 +0.4 4,461,722 - Shewana3_3718 0.60 -1.0 4,461,976 - +0.3 4,461,980 + -0.7 4,461,990 + +0.6 4,462,245 + Shewana3_3719 0.17 +0.1 4,462,318 + Shewana3_3719 0.22 +0.6 4,462,361 + Shewana3_3719 0.25 -1.0 4,462,706 - Shewana3_3719 0.47 +0.1 4,462,772 + Shewana3_3719 0.51 +0.1 4,462,853 + Shewana3_3719 0.57 +0.2 4,462,853 + Shewana3_3719 0.57 +0.2 4,462,941 - Shewana3_3719 0.62 +0.0 4,462,965 + Shewana3_3719 0.64 +0.3
Or see this region's nucleotide sequence