Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3615 and Shewana3_3616 are separated by 107 nucleotides Shewana3_3616 and Shewana3_3617 are separated by 122 nucleotides Shewana3_3617 and Shewana3_3618 are separated by 2 nucleotides Shewana3_3618 and Shewana3_3619 are separated by 12 nucleotides
Shewana3_3615: Shewana3_3615 - transcriptional repressor protein MetJ (RefSeq), at 4,342,192 to 4,342,506
_3615
Shewana3_3616: Shewana3_3616 - hypothetical protein (RefSeq), at 4,342,614 to 4,343,357
_3616
Shewana3_3617: Shewana3_3617 - polysulphide reductase, NrfD (RefSeq), at 4,343,480 to 4,344,424
_3617
Shewana3_3618: Shewana3_3618 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq), at 4,344,427 to 4,344,993
_3618
Shewana3_3619: Shewana3_3619 - molybdopterin oxidoreductase (RefSeq), at 4,345,006 to 4,347,300
_3619
Position (kb) 4343
4344
4345 Strain fitness (log2 ratio) -2
-1
0
1 at 4342.509 kb on - strand at 4342.672 kb on - strand at 4342.696 kb on + strand, within Shewana3_3616 at 4342.704 kb on - strand, within Shewana3_3616 at 4342.704 kb on - strand, within Shewana3_3616 at 4342.727 kb on + strand, within Shewana3_3616 at 4342.730 kb on + strand, within Shewana3_3616 at 4342.858 kb on - strand, within Shewana3_3616 at 4343.109 kb on + strand, within Shewana3_3616 at 4343.230 kb on + strand, within Shewana3_3616 at 4343.230 kb on + strand, within Shewana3_3616 at 4343.287 kb on + strand at 4343.287 kb on + strand at 4343.287 kb on + strand at 4343.287 kb on + strand at 4343.295 kb on - strand at 4343.295 kb on - strand at 4343.295 kb on - strand at 4343.311 kb on + strand at 4343.492 kb on + strand at 4343.668 kb on + strand, within Shewana3_3617 at 4343.676 kb on - strand, within Shewana3_3617 at 4343.676 kb on - strand, within Shewana3_3617 at 4343.679 kb on + strand, within Shewana3_3617 at 4343.709 kb on + strand, within Shewana3_3617 at 4343.710 kb on + strand, within Shewana3_3617 at 4343.724 kb on + strand, within Shewana3_3617 at 4343.724 kb on + strand, within Shewana3_3617 at 4343.732 kb on - strand, within Shewana3_3617 at 4343.732 kb on - strand, within Shewana3_3617 at 4343.773 kb on + strand, within Shewana3_3617 at 4343.773 kb on + strand, within Shewana3_3617 at 4343.773 kb on + strand, within Shewana3_3617 at 4343.773 kb on + strand, within Shewana3_3617 at 4343.781 kb on - strand, within Shewana3_3617 at 4343.817 kb on + strand, within Shewana3_3617 at 4343.833 kb on - strand, within Shewana3_3617 at 4343.872 kb on - strand, within Shewana3_3617 at 4343.906 kb on + strand, within Shewana3_3617 at 4343.912 kb on - strand, within Shewana3_3617 at 4343.957 kb on - strand, within Shewana3_3617 at 4344.136 kb on + strand, within Shewana3_3617 at 4344.270 kb on - strand, within Shewana3_3617 at 4344.462 kb on + strand at 4344.469 kb on - strand at 4344.535 kb on - strand, within Shewana3_3618 at 4345.090 kb on + strand at 4345.098 kb on - strand at 4345.160 kb on + strand at 4345.160 kb on + strand at 4345.362 kb on + strand, within Shewana3_3619
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 4,342,509 - +0.3 4,342,672 - -1.8 4,342,696 + Shewana3_3616 0.11 -0.8 4,342,704 - Shewana3_3616 0.12 +0.9 4,342,704 - Shewana3_3616 0.12 -0.2 4,342,727 + Shewana3_3616 0.15 -0.1 4,342,730 + Shewana3_3616 0.16 +0.4 4,342,858 - Shewana3_3616 0.33 +0.3 4,343,109 + Shewana3_3616 0.67 +0.4 4,343,230 + Shewana3_3616 0.83 +0.3 4,343,230 + Shewana3_3616 0.83 -0.9 4,343,287 + +0.3 4,343,287 + +0.6 4,343,287 + +0.1 4,343,287 + +0.4 4,343,295 - +1.5 4,343,295 - +0.9 4,343,295 - -0.1 4,343,311 + +0.3 4,343,492 + -2.1 4,343,668 + Shewana3_3617 0.20 -0.4 4,343,676 - Shewana3_3617 0.21 +0.2 4,343,676 - Shewana3_3617 0.21 +0.0 4,343,679 + Shewana3_3617 0.21 -0.9 4,343,709 + Shewana3_3617 0.24 +0.2 4,343,710 + Shewana3_3617 0.24 -1.0 4,343,724 + Shewana3_3617 0.26 -2.7 4,343,724 + Shewana3_3617 0.26 -1.1 4,343,732 - Shewana3_3617 0.27 +0.4 4,343,732 - Shewana3_3617 0.27 -0.0 4,343,773 + Shewana3_3617 0.31 -1.4 4,343,773 + Shewana3_3617 0.31 +0.1 4,343,773 + Shewana3_3617 0.31 +0.2 4,343,773 + Shewana3_3617 0.31 -0.3 4,343,781 - Shewana3_3617 0.32 +0.4 4,343,817 + Shewana3_3617 0.36 +0.3 4,343,833 - Shewana3_3617 0.37 +0.7 4,343,872 - Shewana3_3617 0.41 +0.3 4,343,906 + Shewana3_3617 0.45 +0.4 4,343,912 - Shewana3_3617 0.46 +0.2 4,343,957 - Shewana3_3617 0.50 -0.4 4,344,136 + Shewana3_3617 0.69 -1.6 4,344,270 - Shewana3_3617 0.84 +0.2 4,344,462 + +0.6 4,344,469 - +0.4 4,344,535 - Shewana3_3618 0.19 +0.9 4,345,090 + -0.0 4,345,098 - +0.3 4,345,160 + +1.0 4,345,160 + +0.0 4,345,362 + Shewana3_3619 0.16 +0.1
Or see this region's nucleotide sequence