Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3549 and Shewana3_3550 are separated by 382 nucleotides Shewana3_3550 and Shewana3_3551 are separated by 168 nucleotides Shewana3_3551 and Shewana3_3552 are separated by 180 nucleotides
Shewana3_3549: Shewana3_3549 - catalase/peroxidase HPI (RefSeq), at 4,255,905 to 4,258,124
_3549
Shewana3_3550: Shewana3_3550 - hypothetical protein (RefSeq), at 4,258,507 to 4,258,758
_3550
Shewana3_3551: Shewana3_3551 - hypothetical protein (RefSeq), at 4,258,927 to 4,259,457
_3551
Shewana3_3552: Shewana3_3552 - 4-carboxymuconolactone decarboxylase (RefSeq), at 4,259,638 to 4,260,042
_3552
Position (kb)
4258
4259 Strain fitness (log2 ratio)
-2
-1
0
1 at 4257.538 kb on + strand, within Shewana3_3549 at 4257.602 kb on + strand, within Shewana3_3549 at 4257.609 kb on + strand, within Shewana3_3549 at 4257.635 kb on + strand, within Shewana3_3549 at 4257.643 kb on - strand, within Shewana3_3549 at 4257.714 kb on + strand, within Shewana3_3549 at 4257.807 kb on + strand, within Shewana3_3549 at 4257.815 kb on - strand, within Shewana3_3549 at 4257.851 kb on - strand, within Shewana3_3549 at 4257.894 kb on - strand, within Shewana3_3549 at 4258.151 kb on + strand at 4258.628 kb on - strand, within Shewana3_3550 at 4258.883 kb on + strand at 4258.987 kb on + strand, within Shewana3_3551 at 4259.253 kb on - strand, within Shewana3_3551 at 4259.367 kb on - strand, within Shewana3_3551 at 4259.369 kb on + strand, within Shewana3_3551 at 4259.381 kb on + strand, within Shewana3_3551 at 4259.389 kb on - strand, within Shewana3_3551 at 4259.413 kb on + strand at 4259.413 kb on - strand at 4259.414 kb on - strand at 4259.414 kb on - strand at 4259.469 kb on - strand at 4259.492 kb on + strand at 4259.549 kb on + strand at 4259.654 kb on + strand at 4259.654 kb on + strand at 4259.662 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 4,257,538 + Shewana3_3549 0.74 -0.1 4,257,602 + Shewana3_3549 0.76 -0.2 4,257,609 + Shewana3_3549 0.77 -1.2 4,257,635 + Shewana3_3549 0.78 +0.2 4,257,643 - Shewana3_3549 0.78 +0.2 4,257,714 + Shewana3_3549 0.81 -0.9 4,257,807 + Shewana3_3549 0.86 +0.3 4,257,815 - Shewana3_3549 0.86 -1.2 4,257,851 - Shewana3_3549 0.88 -0.5 4,257,894 - Shewana3_3549 0.90 -0.5 4,258,151 + -0.2 4,258,628 - Shewana3_3550 0.48 -2.7 4,258,883 + +0.1 4,258,987 + Shewana3_3551 0.11 +0.3 4,259,253 - Shewana3_3551 0.61 +0.1 4,259,367 - Shewana3_3551 0.83 +0.3 4,259,369 + Shewana3_3551 0.83 -0.5 4,259,381 + Shewana3_3551 0.85 -0.6 4,259,389 - Shewana3_3551 0.87 +0.1 4,259,413 + +0.1 4,259,413 - -0.3 4,259,414 - +1.2 4,259,414 - +0.4 4,259,469 - -1.2 4,259,492 + +0.2 4,259,549 + -1.3 4,259,654 + +0.4 4,259,654 + +0.3 4,259,662 - -0.9
Or see this region's nucleotide sequence