Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3450 and Shewana3_3451 are separated by 586 nucleotides Shewana3_3451 and Shewana3_3452 are separated by 227 nucleotides Shewana3_3452 and Shewana3_3453 are separated by 189 nucleotides
Shewana3_3450: Shewana3_3450 - hypothetical protein (RefSeq), at 4,133,043 to 4,133,441
_3450
Shewana3_3451: Shewana3_3451 - hypothetical protein (RefSeq), at 4,134,028 to 4,135,719
_3451
Shewana3_3452: Shewana3_3452 - hypothetical protein (RefSeq), at 4,135,947 to 4,136,324
_3452
Shewana3_3453: Shewana3_3453 - peptidase M50 (RefSeq), at 4,136,514 to 4,137,638
_3453
Position (kb) 4134
4135
4136 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4133.189 kb on - strand, within Shewana3_3450 at 4133.190 kb on + strand, within Shewana3_3450 at 4133.190 kb on + strand, within Shewana3_3450 at 4133.224 kb on + strand, within Shewana3_3450 at 4133.253 kb on - strand, within Shewana3_3450 at 4133.422 kb on - strand at 4133.604 kb on - strand at 4133.646 kb on - strand at 4133.719 kb on + strand at 4133.801 kb on + strand at 4133.809 kb on - strand at 4133.979 kb on - strand at 4134.114 kb on - strand at 4134.125 kb on - strand at 4134.130 kb on + strand at 4134.160 kb on - strand at 4134.446 kb on + strand, within Shewana3_3451 at 4134.494 kb on - strand, within Shewana3_3451 at 4134.494 kb on - strand, within Shewana3_3451 at 4134.658 kb on + strand, within Shewana3_3451 at 4134.802 kb on + strand, within Shewana3_3451 at 4134.843 kb on + strand, within Shewana3_3451 at 4134.843 kb on + strand, within Shewana3_3451 at 4134.851 kb on - strand, within Shewana3_3451 at 4134.900 kb on - strand, within Shewana3_3451 at 4134.940 kb on + strand, within Shewana3_3451 at 4134.977 kb on + strand, within Shewana3_3451 at 4135.124 kb on - strand, within Shewana3_3451 at 4135.172 kb on + strand, within Shewana3_3451 at 4135.270 kb on - strand, within Shewana3_3451 at 4135.275 kb on + strand, within Shewana3_3451 at 4135.298 kb on - strand, within Shewana3_3451 at 4135.298 kb on - strand, within Shewana3_3451 at 4135.430 kb on - strand, within Shewana3_3451 at 4135.576 kb on + strand at 4135.581 kb on + strand at 4135.675 kb on - strand at 4135.701 kb on - strand at 4135.720 kb on - strand at 4135.729 kb on + strand at 4135.857 kb on + strand at 4135.875 kb on - strand at 4136.015 kb on + strand, within Shewana3_3452 at 4136.110 kb on + strand, within Shewana3_3452 at 4136.140 kb on - strand, within Shewana3_3452 at 4136.247 kb on + strand, within Shewana3_3452 at 4136.247 kb on + strand, within Shewana3_3452 at 4136.255 kb on - strand, within Shewana3_3452 at 4136.255 kb on - strand, within Shewana3_3452 at 4136.332 kb on - strand at 4136.405 kb on + strand at 4136.522 kb on + strand at 4136.668 kb on + strand, within Shewana3_3453
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 4,133,189 - Shewana3_3450 0.37 +0.2 4,133,190 + Shewana3_3450 0.37 -0.6 4,133,190 + Shewana3_3450 0.37 +0.3 4,133,224 + Shewana3_3450 0.45 +0.3 4,133,253 - Shewana3_3450 0.53 +0.1 4,133,422 - +0.1 4,133,604 - -0.7 4,133,646 - -0.2 4,133,719 + +0.3 4,133,801 + -0.8 4,133,809 - +0.8 4,133,979 - +0.2 4,134,114 - -0.2 4,134,125 - -0.1 4,134,130 + -1.2 4,134,160 - -1.6 4,134,446 + Shewana3_3451 0.25 -0.4 4,134,494 - Shewana3_3451 0.28 -0.2 4,134,494 - Shewana3_3451 0.28 -1.2 4,134,658 + Shewana3_3451 0.37 -0.1 4,134,802 + Shewana3_3451 0.46 -3.3 4,134,843 + Shewana3_3451 0.48 -0.6 4,134,843 + Shewana3_3451 0.48 -0.3 4,134,851 - Shewana3_3451 0.49 -1.3 4,134,900 - Shewana3_3451 0.52 -0.3 4,134,940 + Shewana3_3451 0.54 -0.8 4,134,977 + Shewana3_3451 0.56 -0.6 4,135,124 - Shewana3_3451 0.65 +0.3 4,135,172 + Shewana3_3451 0.68 -0.1 4,135,270 - Shewana3_3451 0.73 -0.0 4,135,275 + Shewana3_3451 0.74 -1.1 4,135,298 - Shewana3_3451 0.75 -0.5 4,135,298 - Shewana3_3451 0.75 -0.4 4,135,430 - Shewana3_3451 0.83 +0.2 4,135,576 + -1.6 4,135,581 + -2.1 4,135,675 - -1.4 4,135,701 - -0.3 4,135,720 - +0.3 4,135,729 + +0.4 4,135,857 + +0.2 4,135,875 - -0.4 4,136,015 + Shewana3_3452 0.18 -0.9 4,136,110 + Shewana3_3452 0.43 -1.8 4,136,140 - Shewana3_3452 0.51 -0.8 4,136,247 + Shewana3_3452 0.79 -0.9 4,136,247 + Shewana3_3452 0.79 +0.2 4,136,255 - Shewana3_3452 0.81 -1.1 4,136,255 - Shewana3_3452 0.81 +0.1 4,136,332 - +0.8 4,136,405 + +1.2 4,136,522 + +0.7 4,136,668 + Shewana3_3453 0.14 -0.3
Or see this region's nucleotide sequence