Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2894

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2892 and Shewana3_2893 are separated by 87 nucleotidesShewana3_2893 and Shewana3_2894 overlap by 20 nucleotidesShewana3_2894 and Shewana3_2895 are separated by 176 nucleotidesShewana3_2895 and Shewana3_2896 are separated by 151 nucleotides Shewana3_2892: Shewana3_2892 - hypothetical protein (RefSeq), at 3,462,543 to 3,462,935 _2892 Shewana3_2893: Shewana3_2893 - hypothetical protein (RefSeq), at 3,463,023 to 3,463,694 _2893 Shewana3_2894: Shewana3_2894 - DNA-binding transcriptional activator GcvA (RefSeq), at 3,463,675 to 3,464,586 _2894 Shewana3_2895: Shewana3_2895 - hypothetical protein (RefSeq), at 3,464,763 to 3,464,996 _2895 Shewana3_2896: Shewana3_2896 - thiamine biosynthesis protein ThiI (RefSeq), at 3,465,148 to 3,466,602 _2896 Position (kb) 3463 3464 3465Strain fitness (log2 ratio) -3 -2 -1 0 1at 3462.681 kb on - strand, within Shewana3_2892at 3463.005 kb on - strandat 3463.188 kb on - strand, within Shewana3_2893at 3463.379 kb on - strand, within Shewana3_2893at 3463.390 kb on + strand, within Shewana3_2893at 3463.392 kb on - strand, within Shewana3_2893at 3463.392 kb on - strand, within Shewana3_2893at 3463.392 kb on - strand, within Shewana3_2893at 3463.398 kb on - strand, within Shewana3_2893at 3463.398 kb on - strand, within Shewana3_2893at 3463.398 kb on - strand, within Shewana3_2893at 3463.398 kb on - strand, within Shewana3_2893at 3463.398 kb on - strand, within Shewana3_2893at 3463.406 kb on + strand, within Shewana3_2893at 3463.414 kb on - strand, within Shewana3_2893at 3463.461 kb on - strand, within Shewana3_2893at 3463.513 kb on - strand, within Shewana3_2893at 3464.801 kb on - strand, within Shewana3_2895at 3464.884 kb on + strand, within Shewana3_2895at 3464.884 kb on + strand, within Shewana3_2895at 3464.940 kb on + strand, within Shewana3_2895at 3465.070 kb on - strandat 3465.200 kb on - strandat 3465.238 kb on - strandat 3465.342 kb on - strand, within Shewana3_2896at 3465.387 kb on - strand, within Shewana3_2896at 3465.518 kb on + strand, within Shewana3_2896at 3465.526 kb on - strand, within Shewana3_2896

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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3,462,681 - Shewana3_2892 0.35 +0.4
3,463,005 - -1.9
3,463,188 - Shewana3_2893 0.25 +0.3
3,463,379 - Shewana3_2893 0.53 +0.2
3,463,390 + Shewana3_2893 0.55 +0.5
3,463,392 - Shewana3_2893 0.55 -0.7
3,463,392 - Shewana3_2893 0.55 +0.1
3,463,392 - Shewana3_2893 0.55 -0.1
3,463,398 - Shewana3_2893 0.56 -0.3
3,463,398 - Shewana3_2893 0.56 -0.5
3,463,398 - Shewana3_2893 0.56 -0.0
3,463,398 - Shewana3_2893 0.56 +0.2
3,463,398 - Shewana3_2893 0.56 +0.4
3,463,406 + Shewana3_2893 0.57 -0.3
3,463,414 - Shewana3_2893 0.58 -1.3
3,463,461 - Shewana3_2893 0.65 +0.8
3,463,513 - Shewana3_2893 0.73 -1.1
3,464,801 - Shewana3_2895 0.16 -0.9
3,464,884 + Shewana3_2895 0.52 -0.0
3,464,884 + Shewana3_2895 0.52 -1.4
3,464,940 + Shewana3_2895 0.76 +0.4
3,465,070 - -1.4
3,465,200 - -2.9
3,465,238 - -2.2
3,465,342 - Shewana3_2896 0.13 -1.3
3,465,387 - Shewana3_2896 0.16 -2.7
3,465,518 + Shewana3_2896 0.25 -2.5
3,465,526 - Shewana3_2896 0.26 -2.3

Or see this region's nucleotide sequence