Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2501 and Shewana3_2502 are separated by 55 nucleotides Shewana3_2502 and Shewana3_2503 are separated by 41 nucleotides
Shewana3_2501: Shewana3_2501 - cyclic nucleotide-binding protein (RefSeq), at 2,992,851 to 2,993,531
_2501
Shewana3_2502: Shewana3_2502 - hypothetical protein (RefSeq), at 2,993,587 to 2,994,771
_2502
Shewana3_2503: Shewana3_2503 - purine nucleoside phosphorylase (RefSeq), at 2,994,813 to 2,995,517
_2503
Position (kb)
2993
2994
2995 Strain fitness (log2 ratio)
-1
0
1 at 2992.738 kb on - strand at 2992.879 kb on + strand at 2992.904 kb on - strand at 2992.980 kb on + strand, within Shewana3_2501 at 2993.014 kb on - strand, within Shewana3_2501 at 2993.160 kb on + strand, within Shewana3_2501 at 2993.380 kb on + strand, within Shewana3_2501 at 2993.380 kb on + strand, within Shewana3_2501 at 2993.445 kb on - strand, within Shewana3_2501 at 2993.452 kb on + strand, within Shewana3_2501 at 2993.524 kb on + strand at 2993.974 kb on + strand, within Shewana3_2502 at 2994.030 kb on - strand, within Shewana3_2502 at 2994.101 kb on + strand, within Shewana3_2502 at 2994.112 kb on - strand, within Shewana3_2502 at 2994.168 kb on - strand, within Shewana3_2502 at 2994.427 kb on - strand, within Shewana3_2502 at 2994.811 kb on + strand at 2995.103 kb on - strand, within Shewana3_2503 at 2995.109 kb on - strand, within Shewana3_2503 at 2995.109 kb on - strand, within Shewana3_2503 at 2995.109 kb on - strand, within Shewana3_2503 at 2995.109 kb on - strand, within Shewana3_2503 at 2995.164 kb on - strand, within Shewana3_2503 at 2995.164 kb on - strand, within Shewana3_2503 at 2995.318 kb on - strand, within Shewana3_2503 at 2995.318 kb on - strand, within Shewana3_2503 at 2995.504 kb on - strand at 2995.513 kb on + strand at 2995.521 kb on - strand at 2995.527 kb on - strand at 2995.632 kb on - strand at 2995.655 kb on - strand at 2995.683 kb on - strand at 2995.732 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 2,992,738 - -1.7 2,992,879 + +0.3 2,992,904 - +0.4 2,992,980 + Shewana3_2501 0.19 -0.3 2,993,014 - Shewana3_2501 0.24 +0.2 2,993,160 + Shewana3_2501 0.45 +0.6 2,993,380 + Shewana3_2501 0.78 -0.2 2,993,380 + Shewana3_2501 0.78 -0.5 2,993,445 - Shewana3_2501 0.87 -0.6 2,993,452 + Shewana3_2501 0.88 +0.2 2,993,524 + +0.0 2,993,974 + Shewana3_2502 0.33 +0.6 2,994,030 - Shewana3_2502 0.37 +0.4 2,994,101 + Shewana3_2502 0.43 +1.5 2,994,112 - Shewana3_2502 0.44 +0.5 2,994,168 - Shewana3_2502 0.49 +0.3 2,994,427 - Shewana3_2502 0.71 +0.3 2,994,811 + +1.5 2,995,103 - Shewana3_2503 0.41 -0.8 2,995,109 - Shewana3_2503 0.42 -0.9 2,995,109 - Shewana3_2503 0.42 -1.1 2,995,109 - Shewana3_2503 0.42 -1.4 2,995,109 - Shewana3_2503 0.42 +0.5 2,995,164 - Shewana3_2503 0.50 +0.9 2,995,164 - Shewana3_2503 0.50 -0.1 2,995,318 - Shewana3_2503 0.72 +0.0 2,995,318 - Shewana3_2503 0.72 +0.3 2,995,504 - +0.9 2,995,513 + +0.5 2,995,521 - +0.4 2,995,527 - -0.8 2,995,632 - -0.0 2,995,655 - -0.1 2,995,683 - -1.0 2,995,732 - -1.0
Or see this region's nucleotide sequence