Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2379

Experiment: D-Maltose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_2378 and Shewana3_2379 are separated by 167 nucleotidesShewana3_2379 and Shewana3_2380 are separated by 38 nucleotides Shewana3_2378: Shewana3_2378 - iron-containing alcohol dehydrogenase (RefSeq), at 2,858,100 to 2,859,713 _2378 Shewana3_2379: Shewana3_2379 - hypothetical protein (RefSeq), at 2,859,881 to 2,860,339 _2379 Shewana3_2380: Shewana3_2380 - putative transglycosylase (RefSeq), at 2,860,378 to 2,861,379 _2380 Position (kb) 2859 2860 2861Strain fitness (log2 ratio) -1 0 1at 2859.793 kb on + strandat 2859.988 kb on - strand, within Shewana3_2379at 2860.140 kb on + strand, within Shewana3_2379at 2860.148 kb on - strand, within Shewana3_2379at 2860.215 kb on - strand, within Shewana3_2379at 2860.254 kb on + strand, within Shewana3_2379at 2860.453 kb on - strandat 2860.589 kb on - strand, within Shewana3_2380at 2860.589 kb on - strand, within Shewana3_2380at 2860.737 kb on - strand, within Shewana3_2380at 2860.754 kb on - strand, within Shewana3_2380at 2860.930 kb on + strand, within Shewana3_2380at 2860.968 kb on + strandat 2860.976 kb on - strand, within Shewana3_2380at 2860.976 kb on - strand, within Shewana3_2380at 2860.976 kb on - strand, within Shewana3_2380at 2860.976 kb on - strand, within Shewana3_2380at 2860.976 kb on - strand, within Shewana3_2380at 2860.988 kb on - strand, within Shewana3_2380at 2861.250 kb on - strand, within Shewana3_2380at 2861.267 kb on + strand, within Shewana3_2380at 2861.275 kb on - strand, within Shewana3_2380

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
remove
2,859,793 + -1.2
2,859,988 - Shewana3_2379 0.23 -1.1
2,860,140 + Shewana3_2379 0.56 +0.9
2,860,148 - Shewana3_2379 0.58 +0.3
2,860,215 - Shewana3_2379 0.73 +0.1
2,860,254 + Shewana3_2379 0.81 -1.3
2,860,453 - +0.1
2,860,589 - Shewana3_2380 0.21 +0.6
2,860,589 - Shewana3_2380 0.21 +0.1
2,860,737 - Shewana3_2380 0.36 -1.2
2,860,754 - Shewana3_2380 0.38 -0.5
2,860,930 + Shewana3_2380 0.55 -0.4
2,860,968 + -1.2
2,860,976 - Shewana3_2380 0.60 -0.1
2,860,976 - Shewana3_2380 0.60 +0.6
2,860,976 - Shewana3_2380 0.60 +0.9
2,860,976 - Shewana3_2380 0.60 -0.7
2,860,976 - Shewana3_2380 0.60 -0.8
2,860,988 - Shewana3_2380 0.61 +0.2
2,861,250 - Shewana3_2380 0.87 +0.3
2,861,267 + Shewana3_2380 0.89 -0.2
2,861,275 - Shewana3_2380 0.90 -0.2

Or see this region's nucleotide sequence