Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2313 and Shewana3_2314 are separated by 87 nucleotides Shewana3_2314 and Shewana3_2315 are separated by 115 nucleotides Shewana3_2315 and Shewana3_2316 are separated by 72 nucleotides
Shewana3_2313: Shewana3_2313 - alpha amylase, catalytic region (RefSeq), at 2,783,465 to 2,785,525
_2313
Shewana3_2314: Shewana3_2314 - alpha amylase, catalytic region (RefSeq), at 2,785,613 to 2,787,742
_2314
Shewana3_2315: Shewana3_2315 - glyoxalase/bleomycin resistance protein/dioxygenase (RefSeq), at 2,787,858 to 2,788,286
_2315
Shewana3_2316: Shewana3_2316 - hypothetical protein (RefSeq), at 2,788,359 to 2,788,658
_2316
Position (kb)
2785
2786
2787
2788 Strain fitness (log2 ratio)
-2
-1
0
1 at 2784.627 kb on - strand, within Shewana3_2313 at 2784.721 kb on + strand, within Shewana3_2313 at 2784.791 kb on + strand, within Shewana3_2313 at 2784.810 kb on + strand, within Shewana3_2313 at 2784.818 kb on - strand, within Shewana3_2313 at 2784.952 kb on + strand, within Shewana3_2313 at 2784.977 kb on - strand, within Shewana3_2313 at 2785.186 kb on - strand, within Shewana3_2313 at 2785.502 kb on - strand at 2785.668 kb on + strand at 2785.974 kb on + strand, within Shewana3_2314 at 2785.992 kb on + strand, within Shewana3_2314 at 2786.013 kb on - strand, within Shewana3_2314 at 2786.013 kb on - strand, within Shewana3_2314 at 2786.246 kb on - strand, within Shewana3_2314 at 2786.280 kb on - strand, within Shewana3_2314 at 2786.280 kb on - strand, within Shewana3_2314 at 2786.559 kb on + strand, within Shewana3_2314 at 2786.683 kb on + strand, within Shewana3_2314 at 2786.835 kb on + strand, within Shewana3_2314 at 2786.843 kb on - strand, within Shewana3_2314 at 2786.902 kb on + strand, within Shewana3_2314 at 2787.073 kb on - strand, within Shewana3_2314 at 2787.780 kb on + strand at 2787.969 kb on - strand, within Shewana3_2315 at 2787.999 kb on - strand, within Shewana3_2315 at 2788.224 kb on + strand, within Shewana3_2315 at 2788.372 kb on + strand at 2788.372 kb on + strand at 2788.380 kb on - strand at 2788.442 kb on + strand, within Shewana3_2316
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 2,784,627 - Shewana3_2313 0.56 +0.6 2,784,721 + Shewana3_2313 0.61 +0.9 2,784,791 + Shewana3_2313 0.64 +0.6 2,784,810 + Shewana3_2313 0.65 +0.5 2,784,818 - Shewana3_2313 0.66 -0.6 2,784,952 + Shewana3_2313 0.72 +0.5 2,784,977 - Shewana3_2313 0.73 +0.2 2,785,186 - Shewana3_2313 0.84 -0.3 2,785,502 - +0.0 2,785,668 + -0.6 2,785,974 + Shewana3_2314 0.17 +0.5 2,785,992 + Shewana3_2314 0.18 +0.9 2,786,013 - Shewana3_2314 0.19 +0.8 2,786,013 - Shewana3_2314 0.19 -2.7 2,786,246 - Shewana3_2314 0.30 -0.8 2,786,280 - Shewana3_2314 0.31 +1.0 2,786,280 - Shewana3_2314 0.31 -0.2 2,786,559 + Shewana3_2314 0.44 -1.2 2,786,683 + Shewana3_2314 0.50 -0.0 2,786,835 + Shewana3_2314 0.57 -1.7 2,786,843 - Shewana3_2314 0.58 +0.4 2,786,902 + Shewana3_2314 0.61 -0.7 2,787,073 - Shewana3_2314 0.69 -0.1 2,787,780 + +1.6 2,787,969 - Shewana3_2315 0.26 -0.3 2,787,999 - Shewana3_2315 0.33 +0.2 2,788,224 + Shewana3_2315 0.85 -0.9 2,788,372 + -1.6 2,788,372 + +0.3 2,788,380 - +0.4 2,788,442 + Shewana3_2316 0.28 -1.6
Or see this region's nucleotide sequence