Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2310 and Shewana3_2311 are separated by 125 nucleotides Shewana3_2311 and Shewana3_2312 are separated by 498 nucleotides
Shewana3_2310: Shewana3_2310 - glucose/galactose transporter (RefSeq), at 2,777,055 to 2,778,326
_2310
Shewana3_2311: Shewana3_2311 - Alpha-glucosidase (EC 3.2.1.20) (from data) , at 2,778,452 to 2,780,074
_2311
Shewana3_2312: Shewana3_2312 - 1-(5-phosphoribosyl)-5- (RefSeq), at 2,780,573 to 2,783,398
_2312
Position (kb)
2778
2779
2780
2781 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 2777.468 kb on - strand, within Shewana3_2310 at 2777.493 kb on + strand, within Shewana3_2310 at 2777.582 kb on - strand, within Shewana3_2310 at 2777.704 kb on - strand, within Shewana3_2310 at 2777.768 kb on - strand, within Shewana3_2310 at 2777.768 kb on - strand, within Shewana3_2310 at 2777.802 kb on + strand, within Shewana3_2310 at 2777.892 kb on + strand, within Shewana3_2310 at 2777.928 kb on - strand, within Shewana3_2310 at 2777.972 kb on + strand, within Shewana3_2310 at 2778.036 kb on + strand, within Shewana3_2310 at 2778.321 kb on + strand at 2778.433 kb on + strand at 2778.433 kb on + strand at 2778.433 kb on + strand at 2778.441 kb on - strand at 2778.441 kb on - strand at 2778.602 kb on + strand at 2778.635 kb on + strand, within Shewana3_2311 at 2778.649 kb on - strand, within Shewana3_2311 at 2778.658 kb on - strand, within Shewana3_2311 at 2778.856 kb on + strand, within Shewana3_2311 at 2778.995 kb on - strand, within Shewana3_2311 at 2779.169 kb on - strand, within Shewana3_2311 at 2779.191 kb on + strand, within Shewana3_2311 at 2779.442 kb on - strand, within Shewana3_2311 at 2779.528 kb on - strand, within Shewana3_2311 at 2779.844 kb on + strand, within Shewana3_2311 at 2780.254 kb on - strand at 2780.367 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 2,777,468 - Shewana3_2310 0.32 -1.7 2,777,493 + Shewana3_2310 0.34 -1.3 2,777,582 - Shewana3_2310 0.41 -2.6 2,777,704 - Shewana3_2310 0.51 -2.4 2,777,768 - Shewana3_2310 0.56 -2.9 2,777,768 - Shewana3_2310 0.56 -1.4 2,777,802 + Shewana3_2310 0.59 -1.7 2,777,892 + Shewana3_2310 0.66 -2.4 2,777,928 - Shewana3_2310 0.69 -1.4 2,777,972 + Shewana3_2310 0.72 -2.2 2,778,036 + Shewana3_2310 0.77 -2.8 2,778,321 + -2.2 2,778,433 + -2.9 2,778,433 + -3.1 2,778,433 + -1.2 2,778,441 - -1.3 2,778,441 - -1.9 2,778,602 + -4.1 2,778,635 + Shewana3_2311 0.11 -5.8 2,778,649 - Shewana3_2311 0.12 -4.3 2,778,658 - Shewana3_2311 0.13 -3.8 2,778,856 + Shewana3_2311 0.25 -5.5 2,778,995 - Shewana3_2311 0.33 -4.6 2,779,169 - Shewana3_2311 0.44 -3.3 2,779,191 + Shewana3_2311 0.46 -4.2 2,779,442 - Shewana3_2311 0.61 -4.5 2,779,528 - Shewana3_2311 0.66 -5.3 2,779,844 + Shewana3_2311 0.86 -3.0 2,780,254 - -4.3 2,780,367 - -3.9
Or see this region's nucleotide sequence