Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2253

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2252 and Shewana3_2253 are separated by 218 nucleotidesShewana3_2253 and Shewana3_2254 are separated by 349 nucleotides Shewana3_2252: Shewana3_2252 - LacI family transcription regulator (RefSeq), at 2,713,809 to 2,714,849 _2252 Shewana3_2253: Shewana3_2253 - hypothetical protein (RefSeq), at 2,715,068 to 2,715,784 _2253 Shewana3_2254: Shewana3_2254 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,716,134 to 2,717,771 _2254 Position (kb) 2715 2716Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2714.166 kb on - strand, within Shewana3_2252at 2714.454 kb on + strand, within Shewana3_2252at 2714.651 kb on - strand, within Shewana3_2252at 2715.074 kb on + strandat 2715.120 kb on + strandat 2715.163 kb on - strand, within Shewana3_2253at 2715.183 kb on + strand, within Shewana3_2253at 2715.183 kb on + strand, within Shewana3_2253at 2715.321 kb on - strand, within Shewana3_2253at 2715.658 kb on + strand, within Shewana3_2253at 2715.658 kb on + strand, within Shewana3_2253at 2715.658 kb on + strand, within Shewana3_2253at 2716.034 kb on - strandat 2716.036 kb on + strandat 2716.294 kb on - strandat 2716.527 kb on + strand, within Shewana3_2254

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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2,714,166 - Shewana3_2252 0.34 -3.6
2,714,454 + Shewana3_2252 0.62 -5.0
2,714,651 - Shewana3_2252 0.81 -4.6
2,715,074 + -0.7
2,715,120 + -1.7
2,715,163 - Shewana3_2253 0.13 -1.6
2,715,183 + Shewana3_2253 0.16 -0.7
2,715,183 + Shewana3_2253 0.16 -1.6
2,715,321 - Shewana3_2253 0.35 +1.6
2,715,658 + Shewana3_2253 0.82 -0.1
2,715,658 + Shewana3_2253 0.82 -0.8
2,715,658 + Shewana3_2253 0.82 -0.5
2,716,034 - +0.5
2,716,036 + -0.7
2,716,294 - -0.1
2,716,527 + Shewana3_2254 0.24 -0.7

Or see this region's nucleotide sequence